Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00254 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCGACACCGGAGGCCAGGTCTCGCCGGTTGACCGCTGATATCCTCTGGCCGGATTTGAAGAAACCCAGTCGTGGGAAGCGATTCTCGAAGCCCGCTAGATCTGCATTCGGGGATTCGGATGATGATTTCGAAGCTGATTTTAGGGAGTTCAAGGACGAGTCTGACATCGATGAGGTGGATGTGGATGATGATTTTCTGTCCGATTTCAAGACCTTGGGTTTCTCTGCTGCCAAACCTCCCAAGCCTTCCAGATCCCTGTCTCGCGGATCCGGTGCTGTAGAATCTGTGAAATTCAATGGAAAAGCTAACAAGTCTGAGAAAAGAAAGAGGAAGAATCTCTATAGGGGAATCCGTCAACGCCCATGGGGAAAATGGGCAGCTGAGATCCGTGACCCAAGGAAAGGTGTCCGTGTCTGGCTGGGAACTTTCAACACTGCTGAAGAAGCAGCTAGAGCCTATGATGCTGAAGCACGGAGGATTCGTGGTAAGAAAGCCAAGGTGAACTTTCCTGATGAGGCATCAGGCTCTCCCCCAAAACGTTACAACGCAAAACACTCTGTCCAGCCCATTATGAGCCAGAAATTCAATTTTGGAAACAATCCAAAGGACTACTCCTGTCCTATGGGTCTGATGGAGCAGAAACTACTGGTTAATCAGTATGCTAACATGGGGGGCTTGCCCAGCAGCGTGGATGGGCTCACATCTTTCACACCATCGGATGATGTTAATGTTCCTGTTTGTTTCAGTTCGGATCAAACGAGTAATTCATTTGATTACTCTAGTATTAGCTGGGGCGAACAGGGCCCAAAGACTCCTGACATCTCGTCAATGCTTTCTGCTTCTATAGAAGATGAATTTAAAGCTGTTAATGAGGCCAGCCAGAATACTGACATCCCTAACTCTCAGGGTATGTTGCCAGTGGGAAATGATTCCACAAAGACACTGTCTGAGGAACTTGCAGATATTGAATCCCAGTTGCAGTTCTTTCAGACGCCTTACCTTGAAGGGAGCTGGGGCGATGCTTCATTAGAAGCCTTGCTTGGTGAAAACACAGCTCAGGATGGTGACAACACAATGGACTTTTGGAGCTTTGATGATCTACCTTCCATGGCTGGGGGAGTTTTCGGAGCAACTTTCTCACTGTCTCCTTAA 1185 0.4802 MCGGAIISDFIPTPEARSRRLTADILWPDLKKPSRGKRFSKPARSAFGDSDDDFEADFREFKDESDIDEVDVDDDFLSDFKTLGFSAAKPPKPSRSLSRGSGAVESVKFNGKANKSEKRKRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDEASGSPPKRYNAKHSVQPIMSQKFNFGNNPKDYSCPMGLMEQKLLVNQYANMGGLPSSVDGLTSFTPSDDVNVPVCFSSDQTSNSFDYSSISWGEQGPKTPDISSMLSASIEDEFKAVNEASQNTDIPNSQGMLPVGNDSTKTLSEELADIESQLQFFQTPYLEGSWGDASLEALLGENTAQDGDNTMDFWSFDDLPSMAGGVFGATFSLSP 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00254 394 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Accr6g00254 394 MobiDBLite consensus disorder prediction 87 124 - -
Accr6g00254 394 CDD AP2 125 182 IPR001471 GO:0003700|GO:0006355
Accr6g00254 394 FunFam Ethylene-responsive transcription factor 2 123 182 - -
Accr6g00254 394 SUPERFAMILY DNA-binding domain 124 183 IPR016177 GO:0003677
Accr6g00254 394 Gene3D AP2/ERF domain 124 182 IPR036955 GO:0003700|GO:0006355
Accr6g00254 394 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Accr6g00254 394 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Accr6g00254 394 PANTHER DNA-BINDING DOMAIN 99 265 IPR044808 GO:0003700|GO:0009873
Accr6g00254 394 Pfam AP2 domain 125 173 IPR001471 GO:0003700|GO:0006355
Accr6g00254 394 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00254 Accr-Chr6 3905899 3908280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00254 1 386 AP2-EREBP Transcription Factor Family AT1G53910 44.938 1.41e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr6g00254 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00254 K09286 - cave:132186622 392.889