Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00253 ATGGCTCCATCATCTTCTTCACCTAAAACAACCAGAAAGCCCGGGAAAGGTAGGTGCAAGATTGAGATTAAGAAAGTGGAACAAACCAGCAAGCGTCTTGTCACATTCTCAAAACGCAAACTTGGCCTCTTTCGAAAAGCCGCCGAACTATCTCTTCTCTGTGATTCCCAAATCGCCGTCATTGTCTTCTCCCAATTCGGCAAGGTCTTCACCTCCGGCTACCCTGACCCTGACACCGTCATCCGCCGCTACCTCTCCGGCGCCTCCTCGTCCTCATTCTCAGACCCTACGCCGGTTCATGATCCGGAAAGAGAATCAGCGCCGCTGAGGCAGGAATTTGAAGAGGCCATGAAGGTGTTGGAGAAGGAGAAGAAATTTGTGAATACTGACACTGACAGGTTGGGTTGCGGGCATGGGTTATGGTGGAACCGTTCGGTTGAGGAGATGAGTTTGGAGGAAGTAATGCGGTTCAAGGAGTGTGTTGAACAGTTGAGGCAAAATGTCGCCGCCGCGGCAGAGGACAAGAAGAAGAGCACTTGGCTGATCGATTCACAGTCGCCGCCGGTGACCATGACTGAGGAGAAGAAGAGCAATTGGCTGATAGATTCCCAGTTACTGCCGATGGTGACCACAGCGGAGGAGAAGAAGAGCACTTGGCTGATAGATTCCCAGTTACTGCCGATGGTGACCACAGCGGAGGAGAAGAAGAGCACTTGGCTGATCGATTCCCAGTTACTGCCGATGGTGACCACAGCGGAGGAGAAGAAGAGCACTTGGCTGATCGATTCACAGTTGCCGCTGCCGATGGTGACCACAGTGGAGGAGGAGAAGTGCACTTGGCTGATCGATTCACAGTCGCAGCCGGTGACCATGACTGAGGAGAAGAAGAGCACTTGGCTGATCGATTCCCAGTCACCGCCGATGGTGACCACGGTAGAGGAGAAGAAGAGCACTTGGCTGATCGATCCACAGTTGCCGCTCCCGGTGACCACAGCGGAGGAGGAGAAGTGCACTTGGCTGATCGATTCACAGTCACCGCCAATGACCACAGCGGAGGAGAAGAATAGCACTCGGCTGATCCATTCACAGTCACAGCTGGAGGAGAACTGCACTTGGCTGATCGATACACAGTCGCCACCGTGGTCAACAGCAGATCAGTCTATGTATCTCTCTATGTTTGACGACATGTTGGAGATTGATCAAACATGGGAATCTTGGAATGCAAGTAACAGTTGTGATTCCATTGTTCCGTACAGCAGCGATCTTGGGCAAAACTGGCCACTAACACTTAGGAATTAA 1299 0.5212 MAPSSSSPKTTRKPGKGRCKIEIKKVEQTSKRLVTFSKRKLGLFRKAAELSLLCDSQIAVIVFSQFGKVFTSGYPDPDTVIRRYLSGASSSSFSDPTPVHDPERESAPLRQEFEEAMKVLEKEKKFVNTDTDRLGCGHGLWWNRSVEEMSLEEVMRFKECVEQLRQNVAAAAEDKKKSTWLIDSQSPPVTMTEEKKSNWLIDSQLLPMVTTAEEKKSTWLIDSQLLPMVTTAEEKKSTWLIDSQLLPMVTTAEEKKSTWLIDSQLPLPMVTTVEEEKCTWLIDSQSQPVTMTEEKKSTWLIDSQSPPMVTTVEEKKSTWLIDPQLPLPVTTAEEEKCTWLIDSQSPPMTTAEEKNSTRLIHSQSQLEENCTWLIDTQSPPWSTADQSMYLSMFDDMLEIDQTWESWNASNSCDSIVPYSSDLGQNWPLTLRN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00253 432 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Accr6g00253 432 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Accr6g00253 432 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Accr6g00253 432 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Accr6g00253 432 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 71 IPR002100 GO:0003677|GO:0046983
Accr6g00253 432 Coils Coil 110 130 - -
Accr6g00253 432 SUPERFAMILY SRF-like 17 86 IPR036879 GO:0003677|GO:0046983
Accr6g00253 432 PANTHER MADS BOX PROTEIN 18 169 - -
Accr6g00253 432 Gene3D - 29 90 IPR036879 GO:0003677|GO:0046983
Accr6g00253 432 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00253 Accr-Chr6 3898401 3899699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00253 13 172 Type I MADS-box Gene Family AT5G60440 35.795 1.02e-21 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Accr6g00253 SRF-TF 8.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00253 - - pcin:129319416 220.705