Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00250 ATGTTTCATCCTGGAGGAATTCCCAAACAAACTTGTAGTCTACTTGCTGTCACATGTGGCAAAAACGTTGAGCTTGAGTGCGACAAGAAACTCACTCAGAATCAGCTCAAATATCCTTTTCCCGAGTTTACTTCTTCAGGGCGTTTGGAGGTCCAAACTCTAAACAATCCAGAAAAAGAACAGTTTCGGAAAGTTCTTGAGTCTTTTCAACCAAATTTTGTATATTTACAAGGAGAACGGCTTGCAGATGGCGAAGTTGGTTCTTTGATCTGGCAAGGCGAAGAATTGGCCACCTCTGAAGCTATATCAGAGCTCTTTGGTCCCACATTGCCAACAGCTGTATACTTGGAAATCCCAAATGGAGAAAATTTGGCAGAAACTCTTCATCTTAAGGGAGTTTCATATGTGATTTATTGGAAAAATACTTTTTCTTGTTATGCTGCTTGCCATTTTTGTCAAGCATTTCTTTCAGCGGTGCAGAGCTCTTCTACACATACATGGGATGCCTTTCACCTTGCCCGTGCTTCTTTTGAGTTTTATTGTGTTCAAAACAATCAAGTCCTTCTTGGTGAGAAACATGATTCTAGTGACAATATAGGGCCACACCTTCTTGGAGACTGTCTCCAAATCAATATTGACCCTCCTGAGGTTTGTGAAGATGATGAGTCCTCAGGCAGTCTTCCTGCTATAAAGATACATGATGATGAAGTGAACTTGAGATTTCTTATTTGTGGTTCGCCTTCCATTGTGGATGAGTCACTATTGACATCATTGGTGGATGGACTCAAAGCACTCTTAACCATTGAAATACGGGGGAGCAAACTCCATGGCAAATTTAGTGCTCCCCCACCGCCTCTTCAAGCTGCCACTTTTTCTCGAGGAGTTGTGACCATGCGATGTGATATATCAACCTGTAGTTCAGCCCATATCTCTCTTCTGGTGTCTGGTAGTGCTCAAACTTGCTTCAATGATCAGTTATTGGAGAATCATATAAAAAATGAGATAATTGAGAATAGTCAACTAGTTCGTGCCCAAATTGATGAGGGAAACAAACAAGTCTCTGAACCTCGTAGATCTGCCTCAATTGCTTGTGGAGCACCTGTATTTGAAGTTTGCATGAAGCTTCCTCTATGGGCTTCGCAGGTATTGAGACAGCTAGCTCCTGAAATTACTTATCGAAGTTTAGTTGCACTTGGGATTGCTAGCATTCAGGGGTTGCCTGTTGCTTCATTCGAGAAAGATGATGCTGATCGCCTGCTTTTCTTTTATCGAAGGCAAGAGAAAGATAGTGACGCAGACAAAATAATTTTCAGCAGCCCCCCTAGTTGGTTGAAACCACCCCCTCCTACTAGAAAAAGATGTGAGCCAAGTCAAGAGGCAAGCCCTGGCCTTCAACATGGTGTTTTAACTGGGCTAGGTGTTCAAAACGCGGAAGAGGAAAAGGATACAAAACCCGTGAATGGAATTGGCACATCCTTAACTCCTGCTAGGCAGAGATTAAAAGTGTCTGCAATGAGGCCCATCCCTCATGTTCATCGCCATAGAATGACACTTTTTTCTGGACCTTCTGAGATAGATGGTTACGATGGTGCCCAAGTTGAAACTAGTTTACCTCTTGTTGTCCCTGCAAAGCGTAGTACTATTGGTTCAAGTTCTGCAACACAGAGAAGGTCATTTTCAGGCTCAGCTCAGTCCAAGCAGATTATTTCCTTGAACCCACTGCCCTTGAAAAAACATGGTTGTAGCAGAGGTCCGATCCAAACTTGCCCTGAGGAGGAATTTTTGAAAGATGTCATGGAGTTTCTAATGCTTCGAGGACACAGTCGATTAATTCCTCAAGGTGGGTTTTCTGAGTTTCCTGATGCCATACTCAATGGGAAAAGACTTGATCTCTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTCCATGTTGGTAATGGCATCAATTGGAAAGGACAAATCTTCTCAAAGATGCGCAATTACACAACCACCAATAGAATGACTGGCGTTGGAAATACACTCAAAAGGCACTATGAAACATACCTTCTAGAATATGAATTAGCACATGATGATGTGGATGGAGAGTGCTGCTTATTGTGCCACAGTAGTGCAGCCGGGGATTGGGTGAATTGTGGCATATGCGGTGAGTGGGCTCACTTTGGATGTGACAGACGGCAAGGTCTTGGCGCATTTAAGGATTATGCAAAAACAGATGGACTAGAATATATCTGTCCTCATTGTAGTGTAACAAATTTCAAGAAGAAACCCGCAGGTGTTGCTGCTAATGGGTTTTCTCAGGGTTCAATGACAGCAAAACTCCTTTGA 2331 0.429 MFHPGGIPKQTCSLLAVTCGKNVELECDKKLTQNQLKYPFPEFTSSGRLEVQTLNNPEKEQFRKVLESFQPNFVYLQGERLADGEVGSLIWQGEELATSEAISELFGPTLPTAVYLEIPNGENLAETLHLKGVSYVIYWKNTFSCYAACHFCQAFLSAVQSSSTHTWDAFHLARASFEFYCVQNNQVLLGEKHDSSDNIGPHLLGDCLQINIDPPEVCEDDESSGSLPAIKIHDDEVNLRFLICGSPSIVDESLLTSLVDGLKALLTIEIRGSKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLENHIKNEIIENSQLVRAQIDEGNKQVSEPRRSASIACGAPVFEVCMKLPLWASQVLRQLAPEITYRSLVALGIASIQGLPVASFEKDDADRLLFFYRRQEKDSDADKIIFSSPPSWLKPPPPTRKRCEPSQEASPGLQHGVLTGLGVQNAEEEKDTKPVNGIGTSLTPARQRLKVSAMRPIPHVHRHRMTLFSGPSEIDGYDGAQVETSLPLVVPAKRSTIGSSSATQRRSFSGSAQSKQIISLNPLPLKKHGCSRGPIQTCPEEEFLKDVMEFLMLRGHSRLIPQGGFSEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKPAGVAANGFSQGSMTAKLL 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00250 776 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 692 755 IPR013083 -
Accr6g00250 776 Gene3D - 586 691 IPR036431 GO:0003677
Accr6g00250 776 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 770 IPR042293 -
Accr6g00250 776 SMART ARID_2 585 688 - -
Accr6g00250 776 MobiDBLite consensus disorder prediction 435 466 - -
Accr6g00250 776 SUPERFAMILY ARID-like 588 703 IPR036431 GO:0003677
Accr6g00250 776 CDD PHD_ARID4_like 698 749 - -
Accr6g00250 776 ProSiteProfiles ARID domain profile. 588 692 IPR001606 GO:0003677
Accr6g00250 776 SUPERFAMILY FYVE/PHD zinc finger 691 756 IPR011011 -
Accr6g00250 776 CDD ARID 590 688 - -
Accr6g00250 776 Pfam ARID/BRIGHT DNA binding domain 591 688 IPR001606 GO:0003677
Accr6g00250 776 SMART bright_3 589 693 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00250 Accr-Chr6 3833511 3842023 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00250 1 766 ARID Transcription Factor Family AT3G43240 59.021 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Accr6g00250 ARID 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00250 - - gmx:100816540 1269.6