Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00249 ATGATGTTTCATCCTGGAGGAATTCCCAAACAAACTTGTAGTCTACTTGCTGTCACATGTGGCAAAAACGTTGAGCTTGAGTGCGACAAGAAACTCACTCAGAATCAGCTCAAATATCCTTTTCCCGAGTTTACTTCTTCAGGGCGTTTGGAGGTCCAAACTCTAAACAATCCAGAAAAAGAACAGTTTCGGAAAGTTCTTGAGTCTTTTCAACCAAATTTTGTATATTTACAAGGAGAACGGCTTGCAGATGGCGAAGTTGGTTCTTTGATCTGGCAAGGCGAAGAATTGGCCACCTCTGAAGCTATATCAGAGCTCTTTGGTCCCACATTGCCAACAGCTGTATACTTGGAAATCCCAAATGGAGAAAATTTGGCAGAAACTCTTCATCTTAAGGGAGTTTCATATGTGATTTATTGGAAAAATACTTTTTCTTGTTATGCTGCTTGCCATTTTTGTCAAGCATTTCTTTCAGCGGTGCAGAGCTCTTCTACACATACATGGGATGCCTTTCACCTTGCCCGTGCTTCTTTTGAGTTTTATTGTGTTCAAAACAATCAAGTCCTTCTTGGTGAGAAACATGATTCTAGTGACAATATAGGGCCACACCTTCTTGGAGACTGTCTCCAAATCAATATTGACCCTCCTGAGGTTTGTGAAGATGATGAGTCCTCAGGCAGTCTTCCTGCTATAAAGATACATGATGATGAAGTGAACTTGAGATTTCTTATTTGTGGTTCGCCTTCCATTGTGGATGAGTCACTATTGACATCATTGGTGGATGGACTCAAAGCACTCTTAACCATTGAAATACGGGGGAGCAAACTCCATGGCAAATTTAGTGCTCCCCCACCGCCTCTTCAAGCTGCCACTTTTTCTCGAGGAGTTGTGACCATGCGATGTGATATATCAACCTGTAGTTCAGCCCATATCTCTCTTCTGGTGTCTGGTAGTGCTCAAACTTGCTTCAATGATCAGTTATTGGAGAATCATATAAAAAATGAGATAATTGAGAATAGTCAACTAGTTCGTGCCCAAATTGATGAGGGAAACAAACAAGTCTCTGAACCTCGTAGATCTGCCTCAATTGCTTGTGGAGCACCTGTATTTGAAGTTTGCATGAAGCTTCCTCTATGGGCTTCGCAGGTATTGAGACAGCTAGCTCCTGAAATTACTTATCGAAGTTTAGTTGCACTTGGGATTGCTAGCATTCAGGGGTTGCCTGTTGCTTCATTCGAGAAAGATGATGCTGATCGCCTGCTTTTCTTTTATCGAAGGCAAGAGAAAGATAGTGACGCAGACAAAATAATTTTCAGCAGCCCCCCTAGTTGGTTGAAACCACCCCCTCCTACTAGAAAAAGATGTGAGCCAAGTCAAGAGGCAAGCCCTGGCCTTCAACATGGTGTTTTAACTGGGCTAGGTGTTCAAAACGCGGAAGAGGAAAAGGATACAAAACCCGTGAATGGAATTGGCACATCCTTAACTCCTGCTAGGCAGAGATTAAAAGTGTCTGCAATGAGGCCCATCCCTCATGTTCATCGCCATAGAATGACACTTTTTTCTGGACCTTCTGAGATAGATGGTTACGATGGTGCCCAAGTTGAAACTAGTTTACCTCTTGTTGTCCCTGCAAAGCGTAGTACTATTGGTTCAAGTTCTGCAACACAGAGAAGGTCATTTTCAGGCTCAGCTCAGTCCAAGCAGATTATTTCCTTGAACCCACTGCCCTTGAAAAAACATGGTTGTAGCAGAGGTCCGATCCAAACTTGCCCTGAGGAGGAATTTTTGAAAGATGTCATGGAGTTTCTAATGCTTCGAGGACACAGTCGATTAATTCCTCAAGGTGGGTTTTCTGAGTTTCCTGATGCCATACTCAATGGGAAAAGACTTGATCTCTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTCCATGTTGGTAATGGCATCAATTGGAAAGGACAAATCTTCTCAAAGATGCGCAATTACACAACCACCAATAGAATGACTGGCGTTGGAAATACACTCAAAAGGCACTATGAAACATACCTTCTAGAATATGAATTAGCACATGATGATGTGGATGGAGAGTGCTGCTTATTGTGCCACAGTAGTGCAGCCGGGGATTGGGTGAATTGTGGCATATGCGGTGAGTGGGCTCACTTTGGATGTGACAGACGGCAAGGTCTTGGCGCATTTAAGGATTATGCAAAAACAGATGGACTAGAATATATCTGTCCTCATTGTAGTGTAACAAATTTCAAGAAGAAACCCGCAGGTGTTGCTGCTAATGGGTTTTCTCAGGGTTCAATGACAGCAAAACTCCTTTGA 2334 0.4289 MMFHPGGIPKQTCSLLAVTCGKNVELECDKKLTQNQLKYPFPEFTSSGRLEVQTLNNPEKEQFRKVLESFQPNFVYLQGERLADGEVGSLIWQGEELATSEAISELFGPTLPTAVYLEIPNGENLAETLHLKGVSYVIYWKNTFSCYAACHFCQAFLSAVQSSSTHTWDAFHLARASFEFYCVQNNQVLLGEKHDSSDNIGPHLLGDCLQINIDPPEVCEDDESSGSLPAIKIHDDEVNLRFLICGSPSIVDESLLTSLVDGLKALLTIEIRGSKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLENHIKNEIIENSQLVRAQIDEGNKQVSEPRRSASIACGAPVFEVCMKLPLWASQVLRQLAPEITYRSLVALGIASIQGLPVASFEKDDADRLLFFYRRQEKDSDADKIIFSSPPSWLKPPPPTRKRCEPSQEASPGLQHGVLTGLGVQNAEEEKDTKPVNGIGTSLTPARQRLKVSAMRPIPHVHRHRMTLFSGPSEIDGYDGAQVETSLPLVVPAKRSTIGSSSATQRRSFSGSAQSKQIISLNPLPLKKHGCSRGPIQTCPEEEFLKDVMEFLMLRGHSRLIPQGGFSEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKPAGVAANGFSQGSMTAKLL 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00249 777 Pfam ARID/BRIGHT DNA binding domain 592 689 IPR001606 GO:0003677
Accr6g00249 777 CDD PHD_ARID4_like 699 750 - -
Accr6g00249 777 SUPERFAMILY ARID-like 589 704 IPR036431 GO:0003677
Accr6g00249 777 SMART ARID_2 586 689 - -
Accr6g00249 777 CDD ARID 591 689 - -
Accr6g00249 777 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 8 771 IPR042293 -
Accr6g00249 777 SUPERFAMILY FYVE/PHD zinc finger 692 757 IPR011011 -
Accr6g00249 777 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 693 756 IPR013083 -
Accr6g00249 777 ProSiteProfiles ARID domain profile. 589 693 IPR001606 GO:0003677
Accr6g00249 777 MobiDBLite consensus disorder prediction 436 467 - -
Accr6g00249 777 Gene3D - 587 692 IPR036431 GO:0003677
Accr6g00249 777 SMART bright_3 590 694 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00249 Accr-Chr6 3833511 3842026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00249 2 767 ARID Transcription Factor Family AT3G43240 59.021 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Accr6g00249 ARID 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00249 - - gmx:100816540 1269.6