Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00240 ATGAGTAAGCTCAGGCAAGTCTTCGCCGGGATCTCAGATCCCAGCAACAACAAGAGAAACAAAAAGCTCTTTCTCGCTCTGTTCTCCACTCTCCTCCTCCTCGCCGTCGTTGTTGGCATCGTCGCCGGAGTGAACTCCCGCCAAAAATCCTCCGGTGACGATAATTTGAATTTCTCCCACGCCATCGTTAAATCCGCCTGCAGCACCACACTTTACCCTGAACTTTGCTACTCCGCCGTCTCCTCCGAGCCTGGATTCACCGAGAAAGTCTCTTCCCACCGCGATGTCATCGAACTGTCCTTAAACATAACGATCAGAGCCGTGGAGCACAATCTGTTCAGCATCGAGGAGCTAAACGATAAAAGAAAGGGTAGCCTCACAAAGAGAGAGAAAACCGCTCTTCATGATTGTTTAGAGACAATCGACGAAACGCTCGACGAGCTTCACACCGCTTACCAAGATCTGAAAATCTATCCGAACAATAAAACTCTGTACCAGCACGCCGACGATCTAAAGACTCTGATTAGTGCCGCCATTACCAACCAGGTCACTTGCCTTGACGGATTCTCTTACGACAGCGCCGATAAGAAAGTCAGGGTAGCTCTGGAGACAGGGCAGGTTCACGTGGAGCACATGTGCAGCAATGCTCTGGCGATGATTAAGAACATGACGGACACAGATGTGGCGAACTACGAGATGAAGATGGGAATGACAAAGAGCAGGAGGCTGATGGCGGCGGAAGACGGTGTTCATTGGCCGGAGTGGATGTCGGCGGCAGACAGGCATTTGTTGCAGGCGGCGGAGGTGAAGGCTGACGTGGTGGTAGCGGCGGACGGGAGCGGAAATTTTAAGACGGTGTCGGAGGCAGTGGCGGCGGCTCCGGAGAAGAGTTCGAAGAGATACGTGATTAGGATCAAAGCAGGAGTTTACAAAGAAAATGTGGAAGTTGCAAAGAAGAAGACGAATATAATGTTGTTGGGAGATGGGAGAAAGAATACGATAATTACCGGAAGCAGGAATGTTGTCGACGGAAGCACCACTTTCCATTCTGCTACAGTTGCCGTAGTGGGAGAAAGATTCTTAGCTCGCGACATAACCTTTGAAAACACGGCCGGCCATGCGAAGCACCAAGCCGTCGCCCTCCGGGTAGGTTCCGACTTCGCCGCCTTCTACCAATGCGACTTCCTCGCCTACCAGGACACCCTCTACGTCCACAACAACCGCCAGTTCTTCATCAACTGCCTCATTGCCGGCACCGTCGACTTCATCTTCGGCAACTCCGCCGCCTTGTTCCAAGACTGCGACATCCACGCCCGCCTCCCCGGATCCGGCCAGAAGAACATGGTCACTGCACAGGGTCGGGTGGACCCGAATCAGAATACAGGCATCGTCATCCAGAAGTGCCGGATCGGAGCCACGTCAGAGCTGGAGGCAAAGAAGAAGGACTTCAAGACCTACCTGGGCCGGCCATGGAAGGAGTATTCGAGGACAGTGATCATGCAGTCGACCATATCGGACGTGATCGATCCGGCAGGATGGCACGAGTGGAATGGCAATTTCGCTTTGAACACTCTGTTCTATGGAGAGTATCAGAACAGTGGCGCCGGTGCGGGAACGGCGAACAGAGTGAAGTGGAAGGGGTACAAGGTCATAACGAGTGCTTCGGAGGCTCAACAGTTCACTGCAGCCAGCTTTATTGGTGGCTCTAACTGGTTGCGCTCCACTGGTTTTCCCTTCTCCCTGAGTCTTTAG 1752 0.5297 MSKLRQVFAGISDPSNNKRNKKLFLALFSTLLLLAVVVGIVAGVNSRQKSSGDDNLNFSHAIVKSACSTTLYPELCYSAVSSEPGFTEKVSSHRDVIELSLNITIRAVEHNLFSIEELNDKRKGSLTKREKTALHDCLETIDETLDELHTAYQDLKIYPNNKTLYQHADDLKTLISAAITNQVTCLDGFSYDSADKKVRVALETGQVHVEHMCSNALAMIKNMTDTDVANYEMKMGMTKSRRLMAAEDGVHWPEWMSAADRHLLQAAEVKADVVVAADGSGNFKTVSEAVAAAPEKSSKRYVIRIKAGVYKENVEVAKKKTNIMLLGDGRKNTIITGSRNVVDGSTTFHSATVAVVGERFLARDITFENTAGHAKHQAVALRVGSDFAAFYQCDFLAYQDTLYVHNNRQFFINCLIAGTVDFIFGNSAALFQDCDIHARLPGSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATSELEAKKKDFKTYLGRPWKEYSRTVIMQSTISDVIDPAGWHEWNGNFALNTLFYGEYQNSGAGAGTANRVKWKGYKVITSASEAQQFTAASFIGGSNWLRSTGFPFSLSL 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00240 583 SMART PMEI_2 58 219 IPR006501 GO:0004857
Accr6g00240 583 Gene3D - 266 583 IPR012334 -
Accr6g00240 583 ProSitePatterns Pectinesterase signature 1. 297 316 IPR018040 -
Accr6g00240 583 CDD PMEI-like_3 65 224 - -
Accr6g00240 583 Pfam Plant invertase/pectin methylesterase inhibitor 62 219 IPR006501 GO:0004857
Accr6g00240 583 Pfam Pectinesterase 272 568 IPR000070 GO:0030599|GO:0042545
Accr6g00240 583 NCBIfam pectinesterase inhibitor domain 34 223 IPR006501 GO:0004857
Accr6g00240 583 FunFam Pectinesterase 266 583 - -
Accr6g00240 583 PANTHER PECTINESTERASE 32 573 - -
Accr6g00240 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 224 IPR035513 -
Accr6g00240 583 SUPERFAMILY Pectin lyase-like 269 581 IPR011050 -
Accr6g00240 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 224 IPR035513 -
Accr6g00240 583 FunFam Pectinesterase 59 224 - -
Accr6g00240 583 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00240 Accr-Chr6 3689067 3716121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00240 4 583 Carbohydrate Esterase AT3G14310 68.060 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00240 K01051 - gmx:100776623 848.966