Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00202 ATGGCGGATCCGACGACGATGCAGAGACGTGTGCCTCCAGGATATAGATTCTGTCCAACCGAGGAAGAGCTCGTCGCTTACTACCTCCGCCGCAAATTGATGGCTCCTGATCCATCCATTTATAACACCATCCCTGAGATTGACATTTGCAAGTACGAACCTTGGGAATTACCAGCCTTTCCGGAGACGGAGCAAGATGACTCAGAATGCTATTTCTTCAATCGTTGCGATTACAAGTACTCTAACAGTACTCGGTTTAAAAGGACAACATCACTTGGCTTCTGGAAAGTCACCAGTAAAGACAGACCAATCAAGGACCGTGAGACCAACAATGTCATTGGGATTAAGAAAATTCTAGTATATATATTACCAAGGGCGTTTTCCTCTTGGGAACTGATGCAGTTGGGTCATTCATGA 417 0.4532 MADPTTMQRRVPPGYRFCPTEEELVAYYLRRKLMAPDPSIYNTIPEIDICKYEPWELPAFPETEQDDSECYFFNRCDYKYSNSTRFKRTTSLGFWKVTSKDRPIKDRETNNVIGIKKILVYILPRAFSSWELMQLGHS 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00202 138 Gene3D NAC domain 20 131 IPR036093 GO:0003677|GO:0006355
Accr6g00202 138 ProSiteProfiles NAC domain profile. 11 138 IPR003441 GO:0003677|GO:0006355
Accr6g00202 138 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 126 - -
Accr6g00202 138 Pfam No apical meristem (NAM) protein 12 123 IPR003441 GO:0003677|GO:0006355
Accr6g00202 138 SUPERFAMILY NAC domain 5 129 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00202 Accr-Chr6 3285012 3285543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00202 11 126 NAC Transcription Factor Family AT3G49530 49.138 2.93e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr6g00202 NAM 7.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00202 - - pcin:129322017 179.489