Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00200 ATGGCGACCACTCTCTCTCACTTTCCTCAATCATCGTCTCCTTCAAATTCTTGGCTTCCCCCCTCCGACGCCTATGCTAATATGGCTGAGACAACCATGGCTCCGGCGGATCTAGCTCTGGCGGAGAGATCTATGCCTGTTGGGTGCAGGTTTCATCCGACCGACCAAGAGCTCGTTGGCCACTACCTCGGCCACAAATTGAGGGCTGACGATCCTTTCATTCACGACACCATCCCTGAGTTTGGCCTCTGCAAGGGTGAACCCTGGGATTTATTAGAGTGGGCTACTTCCGCTTCAGCAGTCAAGTTTGATGAATCACAATGCTATTTCTTCAGTCCTCGCGACCCTAAGTACTCTAACAGTACTCGGTCGAACAGAGCAACCTTAGGTGGCTTCTGGAAATTAACTGGTAGAGACCGTAAAATCACAAGTAAAGGTACCAACAAAGTTATTGGGACCAAGAAGACCCTGGTTTATTATGAAGGCCGTGTTCCTCGTGCAATCAAAACTAACTGGATAACTCATGAATATGAATATCATGATGACAAGTTATCTCATGACCAGAGGTCTCATGTTCTTTGTTGGTTAAGGAAGGATAATGAGAAGAAAACAAAACAAAAAACTCATCAACTAGTTGATGATTATGGAAGTCAAGCAATTATATGTATGAATTCAGATGAACACTGTATGAGTTCAATGATTCAAGGATCTTCCGAATCAAGTGAAGTTATAGACTCAATGATTCAAATGCCATTTGGATCAAATGAAGCTGTAGAATCAATGATTCAAGTATCTTCTCAATCAAATAGAACTATAGACTCAATGATTCAAATACCTTTTGAATCAAATGAAGTTATAGACTCATTGATTGAATTATCTTCCCAATCTAATGGAGCTATAGACCCAATGATTCAAATACTTTTTGAATCAAATGAAGTTGTAGACTCCTCTCAATCAAATGAAGCTATAGACTCAATGATTCAAAAACTTTTTGAATCGAGGTTGTAG 1008 0.4067 MATTLSHFPQSSSPSNSWLPPSDAYANMAETTMAPADLALAERSMPVGCRFHPTDQELVGHYLGHKLRADDPFIHDTIPEFGLCKGEPWDLLEWATSASAVKFDESQCYFFSPRDPKYSNSTRSNRATLGGFWKLTGRDRKITSKGTNKVIGTKKTLVYYEGRVPRAIKTNWITHEYEYHDDKLSHDQRSHVLCWLRKDNEKKTKQKTHQLVDDYGSQAIICMNSDEHCMSSMIQGSSESSEVIDSMIQMPFGSNEAVESMIQVSSQSNRTIDSMIQIPFESNEVIDSLIELSSQSNGAIDPMIQILFESNEVVDSSQSNEAIDSMIQKLFESRL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00200 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 43 260 - -
Accr6g00200 335 Pfam No apical meristem (NAM) protein 46 178 IPR003441 GO:0003677|GO:0006355
Accr6g00200 335 SUPERFAMILY NAC domain 36 198 IPR036093 GO:0003677|GO:0006355
Accr6g00200 335 ProSiteProfiles NAC domain profile. 45 199 IPR003441 GO:0003677|GO:0006355
Accr6g00200 335 Gene3D NAC domain 54 205 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00200 Accr-Chr6 3269010 3270642 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00200 40 200 NAC Transcription Factor Family AT3G17730 48.171 5.30e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr6g00200 NAM 1.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00200 - - pcin:129322017 255.373