Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00177 ATGATGGAGAGGATTCAAGGACCCATCAATTCCTGTTTCTTTGGTGAGCATTTGGAAGTAAGTTGTTTCGAGCAAGGCTTCATCAACACAGAGGATGAGGAACAACTTTATATATCAAGCTTAGAGGATGAAAAGATGCCTTTTCTGCAGATGTTGCAGAGTGTGGAATCTCCACAACAGTTTTTCCCATTCTCAGAGGCAAATTTTCAAACACTTTTAAGGCTACAGAACCTGAAGAGACAACAACCATGGGAGGAAGAAAAAGTTCACATACCCAGATTGGAGACTCAAATCCCAGCTAAAGAACTTGAAAGCTGCGTCACACATGACGTCTTCGAAATCCACTCGCCAGTGAAATCCGAAACCAACGAAGAATCCCATCTTCCTCGTTCAGCCACAATGGTTCAGATAGAACCCACCAATAATCAAGCTGAAAATTCTACCAGAGACCCCAAACGGAGAAAGCGAAAGAGAACAAGACCAGTCAAGAACAAGGAAGAAGTGGAAAACCAGAGAATGACCCACATTGCTGTCGAACGGAACCGGCGACGCCAGATGAACGACCATCTTAGCGTTCTGAGAACTCTCATGCCTCCTTCCTATATCCAAAGGGGTGACCAAGCGTCTATCATCGGAGGTGCAATTGATTTCGTGAAGGAATTGGAGCAACTACATCAAACCCTCGAAGCACAAAAAAGGATTAGAAAGAACGAAGAGTTTGGATGTTCTTACGGAGGAGAAACTATGAAACCATCGTCAATGAGCTGCGAAGAAGGAGAAGAAAAAGAAGAAGACTTGAAGGAAGCAGAGATTATAGAGGTGATGGTGATTCAGACGCATGTGAAATTGAAGATTCGATGCAGAAAAAAGCAGGGGCAACTGGTGAGAGCCATTGTTGGATTGGAAGAGCTTAGGCTTAGTGTTCTGCATCTGAACATAACCTCCTCACTGGGATCGGTACTATACTGTTTCAATCTCAAGATAGAAGAAGAGTGTAAGCTAGGGACGGCGAATGAGATAGCAGAAGCGGTGGGTCACATATTCAGAGCCATTGATAATTAA 1062 0.4379 MMERIQGPINSCFFGEHLEVSCFEQGFINTEDEEQLYISSLEDEKMPFLQMLQSVESPQQFFPFSEANFQTLLRLQNLKRQQPWEEEKVHIPRLETQIPAKELESCVTHDVFEIHSPVKSETNEESHLPRSATMVQIEPTNNQAENSTRDPKRRKRKRTRPVKNKEEVENQRMTHIAVERNRRRQMNDHLSVLRTLMPPSYIQRGDQASIIGGAIDFVKELEQLHQTLEAQKRIRKNEEFGCSYGGETMKPSSMSCEEGEEKEEDLKEAEIIEVMVIQTHVKLKIRCRKKQGQLVRAIVGLEELRLSVLHLNITSSLGSVLYCFNLKIEEECKLGTANEIAEAVGHIFRAIDN 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00177 353 SMART finulus 176 227 IPR011598 GO:0046983
Accr6g00177 353 Coils Coil 218 238 - -
Accr6g00177 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 238 IPR036638 GO:0046983
Accr6g00177 353 Gene3D - 161 241 IPR036638 GO:0046983
Accr6g00177 353 PANTHER MAX DIMERIZATION, MAD 108 351 - -
Accr6g00177 353 MobiDBLite consensus disorder prediction 127 146 - -
Accr6g00177 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 221 IPR011598 GO:0046983
Accr6g00177 353 CDD bHLH_AtFAMA_like 173 244 - -
Accr6g00177 353 MobiDBLite consensus disorder prediction 118 168 - -
Accr6g00177 353 Pfam Helix-loop-helix DNA-binding domain 171 222 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00177 Accr-Chr6 2863516 2866078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00177 43 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 44.000 6.93e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr6g00177 HLH 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00177 - - qsa:O6P43_018514 386.341