Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00172 ATGGAAGCTATTCTCTGCCTCACTCCACCTTTCTTCTCAGTATCAAGAAACAAGCCTCAAATCGTAGCTTCAGCGAAATGGTTAGCTTCATGCTCATCGTTTCTTCCTTCTGCGGTTCATTCATTATCTCTGGGCGTTATCTTCTCTCCGCAGCCTTTCACTTCGGACCCTTCATCTTACTCTTCGTTATGGAAGGGGCGAAGCAGGAAAGCTAGGGTTCTAGCGGTGGTAGATGAAGAAACGGCGCTTGCAGAAGATATTACTGGAGAAAAATCTGTGGACGCAGAAAACGATGACGTTTTCCATGAGAGAGAACCGAGTAAAGTGGGAAGACCGTGTGAATTGTATGTTTGTAATCTTCCAAGGAGCTGTGATTCAACTCAGCTTTACGATTTGTTCAAGCCTTATGGATTTGTCCTATCTGCTGAGGTTGATCGTAATGATGAGACCGGTGAAAGTAGAGGATGTGCTTATGTCACAATGGGATCCCTAAACTCAGCAAGAAAAGCAGTTGCTGCATTGGATAGATCAGATATTGGTGGGCGTGAAATGCGGGTTAGATTTTCAGCCGAGATGAATCCTGGAAGGAGCAATGTTGAGGCGATGAACTCGTTACCCCTGAAAGTTTTATACCATGAAACTCCTCACAAGTTATATATTGGCAATCTTGCTAGGGTTGTTGAACCTGGAGACTTATGGAATCATTTTCGAAGATTTGGGACTGTTGTTAGTGTAAGAATACTGCATAATCGGAGTAGCCGTGTTTATGCATTTCTCTCCTTTCTTTCTCAGTCAGAACGTGATGCAGCATTGTCTCTTAATGGAACCGAACTTTGTGGCCGTATACTAGTAGTGAGAGAAGCCGTTGAGAGGACTGTGCCATAG 885 0.4407 MEAILCLTPPFFSVSRNKPQIVASAKWLASCSSFLPSAVHSLSLGVIFSPQPFTSDPSSYSSLWKGRSRKARVLAVVDEETALAEDITGEKSVDAENDDVFHEREPSKVGRPCELYVCNLPRSCDSTQLYDLFKPYGFVLSAEVDRNDETGESRGCAYVTMGSLNSARKAVAALDRSDIGGREMRVRFSAEMNPGRSNVEAMNSLPLKVLYHETPHKLYIGNLARVVEPGDLWNHFRRFGTVVSVRILHNRSSRVYAFLSFLSQSERDAALSLNGTELCGRILVVREAVERTVP 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00172 294 SUPERFAMILY RNA-binding domain, RBD 111 196 IPR035979 GO:0003676
Accr6g00172 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 282 IPR000504 GO:0003723
Accr6g00172 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 185 IPR000504 GO:0003723
Accr6g00172 294 PANTHER OS02G0815200 PROTEIN 51 290 - -
Accr6g00172 294 SUPERFAMILY RNA-binding domain, RBD 213 291 IPR035979 GO:0003676
Accr6g00172 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 191 IPR000504 GO:0003723
Accr6g00172 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 290 IPR000504 GO:0003723
Accr6g00172 294 Gene3D - 62 204 IPR012677 -
Accr6g00172 294 Gene3D - 211 293 IPR012677 -
Accr6g00172 294 SMART rrm1_1 114 187 IPR000504 GO:0003723
Accr6g00172 294 SMART rrm1_1 217 286 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00172 113 285 Eukaryotic Initiation Factors Gene Family AT2G23350 28.409 5.54e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00172 - - pcin:129288259 417.927