Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr6g00166 | ATGTCGATTGGAGAGACTGCTTGTACTTACGCGACTCTGATCCTCCATGATGATGGCATTCCCATCACTGCCGAGAAGATATCGACCATCGTGAAGGCGGCAAATGTTCAGGTCGAATCTTATTGGCCAAGCTTGTTCGCTAAACTTGCTGAGAAGCGAAACATTGAGGATTTGATAGTGAATGCTGGAGGAGGCGGGGCTTCGGTTGCCGTTGCGGCAGTCCCAGCTGCCGTTGGCGGCGGGGGCGCAGCAGCTCCTCCTCCTGCTGAGGAGAAGAAGGAAGAGCCCCAAGAAGAGAGCGATGGTGACATGGGATTCAGCTTGTTTGATTAG | 333 | 0.5345 | MSIGETACTYATLILHDDGIPITAEKISTIVKAANVQVESYWPSLFAKLAEKRNIEDLIVNAGGGGASVAVAAVPAAVGGGGAAAPPPAEEKKEEPQEESDGDMGFSLFD | 110 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr6g00166 | 110 | FunFam | 60S acidic ribosomal protein P1 | 1 | 63 | - | - | |
| Accr6g00166 | 110 | Pfam | 60s Acidic ribosomal protein | 22 | 109 | - | - | |
| Accr6g00166 | 110 | PANTHER | 60S ACIDIC RIBOSOMAL PROTEIN P1 | 1 | 110 | - | - | |
| Accr6g00166 | 110 | MobiDBLite | consensus disorder prediction | 79 | 110 | - | - | |
| Accr6g00166 | 110 | Hamap | 50S ribosomal protein L12 [rpl12]. | 6 | 110 | IPR027534 | GO:0003735|GO:0005840|GO:0006414 | |
| Accr6g00166 | 110 | CDD | Ribosomal_P1 | 5 | 61 | - | - | |
| Accr6g00166 | 110 | Gene3D | - | 1 | 63 | IPR038716 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr6g00166 | Accr-Chr6 | 2744620 | 2745324 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr6g00166 | 1 | 110 | Cytoplasmic Ribosomal Protein Gene Family | AT5G24510 | 60.177 | 1.10e-39 | 126 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr6g00166 | K02942 | - | han:110864631 | 136.732 |