Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00165 ATGTCGCAACAAAGGCAATTCCAAATGGTGGGAGGGCAATACAACATCGACACAACATTGACAAAAATCTTCGTGGGAGGGCTTGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAGTTCGGAGAGATTCTTGAAGCTGTTGTCATCACAGAAAAGAACACAGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCAGAAGCAGCCATGCGAGCATGTCAGAACCCTAATCCTGTTATTGATGGAAGAAGAACAAACTGCAATCTTGCTTCTCTTGGTGCAAACAAGAATCGGCCTTCTCCAACTCCTCAACTTGGTACAAGAAGGTTCAGAGCAGCACCTGGATTGGTGGGCTTGCAGCCAGCATTTCACGGTTCTTCCTCCACAATTTTCCGTCAACCCACTGGGCAATACACATTTCCATATTCACCTTACAGATACTCTGGATATTCACAAGACTCCATCTATCCCTTGAACTATTACAGTGTGTATGGAGACAGTGGCCAGGCTCATCATGGTTTTGGAGTTCATCACTATCCTCAAATGGTACACTTGCCAGTTCTTCATCCAGTCCCCTCATTTCCTTCTTCAATGCCAATGCCAACTACTCCTAGCGAAGTGGCATCAGCATCAATAGCAGCAGGGGAACAGAAAGAATCCGTAGGAGTAGGTGCTTCACAAGTCTCTGCAGTAAAAGCTTCAGAACAAAACTCTTCATCAACTTAA 744 0.4543 MSQQRQFQMVGGQYNIDTTLTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITEKNTGRSKGYGFVTFKDPEAAMRACQNPNPVIDGRRTNCNLASLGANKNRPSPTPQLGTRRFRAAPGLVGLQPAFHGSSSTIFRQPTGQYTFPYSPYRYSGYSQDSIYPLNYYSVYGDSGQAHHGFGVHHYPQMVHLPVLHPVPSFPSSMPMPTTPSEVASASIAAGEQKESVGVGASQVSAVKASEQNSSST 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00165 247 SMART rrm1_1 22 94 IPR000504 GO:0003723
Accr6g00165 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 98 IPR000504 GO:0003723
Accr6g00165 247 PANTHER BOULE-RELATED 16 206 - -
Accr6g00165 247 MobiDBLite consensus disorder prediction 228 247 - -
Accr6g00165 247 CDD RRM_RBM24_RBM38_like 21 96 - -
Accr6g00165 247 Gene3D - 14 103 IPR012677 -
Accr6g00165 247 MobiDBLite consensus disorder prediction 202 247 - -
Accr6g00165 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 81 IPR000504 GO:0003723
Accr6g00165 247 SUPERFAMILY RNA-binding domain, RBD 20 108 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00165 Accr-Chr6 2739958 2741577 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00165 17 97 C2H2 Transcription Factor Family AT2G19380 43.210 6.48e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00165 - - qsa:O6P43_018526 308.531