Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00164 ATGTCGCAACAAAGGCAATTCCAAATGGTGGGAGGGCAATACAACATCGACACAACATTGACAAAAATCTTCGTGGGAGGGCTTGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAGTTCGGAGAGATTCTTGAAGCTGTTGTCATCACAGAAAAGAACACAGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCAGAAGCAGCCATGCGAGCATGTCAGAACCCTAATCCTGTTATTGATGGAAGAAGAACAAACTGCAATCTTGCTTCTCTTGGTGCAAACAAGAATCGGCCTTCTCCAACTCCTCAACTTGGTACAAGAAGGTTCAGAGCAGCACCTGGATTGGTGGGCTTGCAGCCAGCATTTCACGGTTCTTCCTCCACAATTTTCCGTCAACCCACTGGGCAATACACATTTCCATATTCACCTTACAGCTACAGATACTCTGGATATTCACAAGACTCCATCTATCCCTTGAACTATTACAGTGTGTATGGAGACAGTGGCCAGGCTCATCATGGTTTTGGAGTTCATCACTATCCTCAAATGGTACACTTGCCAGTTCTTCATCCAGTCCCCTCATTTCCTTCTTCAATGCCAATGCCAACTACTCCTAGCGAAGTGGCATCAGCATCAATAGCAGCAGGGGAACAGAAAGAATCCGTAGGAGTAGGTGCTTCACAAGTCTCTGCAGTAAAAGCTTCAGAACAAAACTCTTCATCAACTTAA 750 0.4547 MSQQRQFQMVGGQYNIDTTLTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITEKNTGRSKGYGFVTFKDPEAAMRACQNPNPVIDGRRTNCNLASLGANKNRPSPTPQLGTRRFRAAPGLVGLQPAFHGSSSTIFRQPTGQYTFPYSPYSYRYSGYSQDSIYPLNYYSVYGDSGQAHHGFGVHHYPQMVHLPVLHPVPSFPSSMPMPTTPSEVASASIAAGEQKESVGVGASQVSAVKASEQNSSST 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00164 249 SMART rrm1_1 22 94 IPR000504 GO:0003723
Accr6g00164 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 98 IPR000504 GO:0003723
Accr6g00164 249 Coils Coil 249 249 - -
Accr6g00164 249 Gene3D - 14 103 IPR012677 -
Accr6g00164 249 MobiDBLite consensus disorder prediction 230 249 - -
Accr6g00164 249 CDD RRM_RBM24_RBM38_like 21 96 - -
Accr6g00164 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 81 IPR000504 GO:0003723
Accr6g00164 249 PANTHER BOULE-RELATED 16 208 - -
Accr6g00164 249 MobiDBLite consensus disorder prediction 204 249 - -
Accr6g00164 249 SUPERFAMILY RNA-binding domain, RBD 20 108 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00164 Accr-Chr6 2739958 2741577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00164 17 97 C2H2 Transcription Factor Family AT2G19380 43.210 7.27e-16 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00164 - - qsa:O6P43_018526 291.197