Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00163 ATGTTGATAATGTCGCAACAAAGGCAATTCCAAATGGTGGGAGGGCAATACAACATCGACACAACATTGACAAAAATCTTCGTGGGAGGGCTTGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAGTTCGGAGAGATTCTTGAAGCTGTTGTCATCACAGAAAAGAACACAGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCAGAAGCAGCCATGCGAGCATGTCAGAACCCTAATCCTGTTATTGATGGAAGAAGAACAAACTGCAATCTTGCTTCTCTTGGTGCAAACAAGAATCGGCCTTCTCCAACTCCTCAACTTGGTACAAGAAGGTTCAGAGCAGCACCTGGATTGGTGGGCTTGCAGCCAGCATTTCACGGTTCTTCCTCCACAATTTTCCGTCAACCCACTGGGCAATACACATTTCCATATTCACCTTACAGCTACAGATACTCTGGATATTCACAAGACTCCATCTATCCCTTGAACTATTACAGTGTGTATGGAGGTCAACAATTTTCACCATACTATTCATCATCCGGTGGGCCATCTGGGCTAGCAGGGTTAATGAACAGTGACATTTACCCATTCTATACTCAATTTGCAGACAGTGGCCAGGCTCATCATGGTTTTGGAGTTCATCACTATCCTCAAATGGTACACTTGCCAGTTCTTCATCCAGTCCCCTCATTTCCTTCTTCAATGCCAATGCCAACTACTCCTAGCGAAGTGGCATCAGCATCAATAGCAGCAGGGGAACAGAAAGAATCCGTAGGAGTAGGTGCTTCACAAGTCTCTGCAGTAAAAGCTTCAGAACAAAACTCTTCATCAACTTAA 858 0.4487 MLIMSQQRQFQMVGGQYNIDTTLTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITEKNTGRSKGYGFVTFKDPEAAMRACQNPNPVIDGRRTNCNLASLGANKNRPSPTPQLGTRRFRAAPGLVGLQPAFHGSSSTIFRQPTGQYTFPYSPYSYRYSGYSQDSIYPLNYYSVYGGQQFSPYYSSSGGPSGLAGLMNSDIYPFYTQFADSGQAHHGFGVHHYPQMVHLPVLHPVPSFPSSMPMPTTPSEVASASIAAGEQKESVGVGASQVSAVKASEQNSSST 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00163 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Accr6g00163 285 SUPERFAMILY RNA-binding domain, RBD 24 111 IPR035979 GO:0003676
Accr6g00163 285 MobiDBLite consensus disorder prediction 266 285 - -
Accr6g00163 285 Gene3D - 17 106 IPR012677 -
Accr6g00163 285 PANTHER BOULE-RELATED 18 256 - -
Accr6g00163 285 SMART rrm1_1 25 97 IPR000504 GO:0003723
Accr6g00163 285 MobiDBLite consensus disorder prediction 240 285 - -
Accr6g00163 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 84 IPR000504 GO:0003723
Accr6g00163 285 CDD RRM_RBM24_RBM38_like 24 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00163 Accr-Chr6 2739949 2741577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00163 20 198 C2H2 Transcription Factor Family AT2G19380 30.052 5.11e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00163 - - qsa:O6P43_018526 312.383