Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00159 ATGCCGGAAAACATGAGTATCTCTGTGAATGTGAATGGACAATCTCAGGTCCCTCCTGGCTTCAGATTCCACCCCACCGAAGAAGAGCTTCTGCAGTACTACTTGAGGAAGAAGGTCTCCTACGAGAAGATTGACCTCGACGTCATTCGTGACGTCGATCTCAACAAGCTCGAACCTTGGGATATTCAAGAGAGGTGTAAGATAGGAACCACACCGCAAAACGACTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACTGGGACGCGAACCAACCGAGCCACGGCGGCCGGATTCTGGAAAGCCACCGGCCGGGATAAGGTGATATACAGCAACGGCAAGAGGATCGGAATGAGGAAGACTCTTGTCTTCTACAAAGGCCGTGCCCCTCATGGCCAGAAATCTGATTGGATCATGCACGAATATCGCCTAGACGATAACACCAGCGACACCAACATCGTGCCGAATGTGATGGGAGATGGAGCACAGGAAGAAGGATGGGTGGTATGCAGAATATTCAAGAAGAAGAATCATCTGAAAACCCTGGATTGCCCCTTAACTTCGTCCATTATTACCGGAGAAAGTGGCAGAAGAAGCCACAACATGTTCGACGACGATGAAGGAGCTTTAGAGCAGATACTTCAGCAAATGGGAAGAAGCTGCAAGGAAGAGAACGAAGTGAATTACAGCAACAACAATAATGGAAGATTCTCTCTATCATCAAACTTCAACAATAATAACGGCGGTGATCATAGTAGTTCTATCAACTACAATGACAGGTTCTTGAAGCTCCCAAGCTTAGAAAGTCCAAAATCCACAAGCTTAGAGAATAATCATAATAATATTGACACCAACAATAATGTGTACCACCCTATGATCCCAGAGATGGAAGGATCCTTCACGACCGTTCATCACATGGATGGATCTAACGGTGGAAGGCTCGCCAACTGGGCGGCTCTGGATCGTCTTGTTGCTTCGCAGCTCAATGGCCAGACTGAGTCTTCCAGGCAGCTAGCTTGCTTCAGTACTGACCCCACAAGCAGCTCCATGATGGTGTACGGTACTAACGACGTCGTTCAGGATCTGCAAATGCCCACCCTACGATCATCCTCATCGTCCACGTCAACGTCCACGCACAGAGCAGCGTTCGTGAGTCCTCACGCACAAGATTATAACAGCAGCGAGATTGACCTATGGACCTTTGCCAGATCAGCATCATCGTTGTTGTCGTCTTCCTCAGAGCCACTGTGCCATGTGTCGAACACGTCAGTGTAA 1278 0.4844 MPENMSISVNVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQERCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTSDTNIVPNVMGDGAQEEGWVVCRIFKKKNHLKTLDCPLTSSIITGESGRRSHNMFDDDEGALEQILQQMGRSCKEENEVNYSNNNNGRFSLSSNFNNNNGGDHSSSINYNDRFLKLPSLESPKSTSLENNHNNIDTNNNVYHPMIPEMEGSFTTVHHMDGSNGGRLANWAALDRLVASQLNGQTESSRQLACFSTDPTSSSMMVYGTNDVVQDLQMPTLRSSSSSTSTSTHRAAFVSPHAQDYNSSEIDLWTFARSASSLLSSSSEPLCHVSNTSV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00159 425 ProSiteProfiles NAC domain profile. 17 176 IPR003441 GO:0003677|GO:0006355
Accr6g00159 425 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 277 - -
Accr6g00159 425 FunFam NAC domain-containing protein 26 180 - -
Accr6g00159 425 SUPERFAMILY NAC domain 12 176 IPR036093 GO:0003677|GO:0006355
Accr6g00159 425 Gene3D NAC domain 26 181 IPR036093 GO:0003677|GO:0006355
Accr6g00159 425 Pfam No apical meristem (NAM) protein 18 145 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00159 Accr-Chr6 2668939 2670670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00159 6 424 NAC Transcription Factor Family AT2G46770 53.380 2.08e-139 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr6g00159 NAM 5.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00159 - - pcin:129288653 702.205