Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00156 ATGTCAGAAGGTGCGGAAGTTGATGAGCGGGTGGACTTTGATGAGGAAAACTACATGGAGGAGATAGAAGATGATGTGGAAGAACAAATATATGATGAAGGAGTGGATGGAGGTGGTGATGAAAATGAGGAGAATGTTGAGGAACATGAATATGAAGATTCAGTAGCAGAACCTTGCGGGAAAGATCAGTATCCCGAAGCAGATGGAAGTGACATTGGTACTGACTCTGTAGAAAATGAGCAAAAGCCATTTTCCATTGATGAAAATGAGAAGGAGATACACGAGGAACTTCTTGCACTTCCTCCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATACGTGTGAAGATGACTTGAGAGAAATGTGTGAGCCAATTGGTGATATTCTTGAGGTGAGACTTATGAAAGATAGGGATACAGGAGATGTTAAGGGCTATGCTTTTGTGGCATTTAAAACGAAAGAGATTGCACAGAAGGCCATTGAAGAGTTACATAGCAAGGAGTTTAAGGGTAAAACTTTAAGGTGTTCAGTGTCTGAAACAAAACACAGATTGTTTATTGGTAATGTTCCAAAAAGCTGGACGGAGGATGAGTTTAGGAAAGTCATCATGGGTGTTGGTCCTGGAGTTGAAAATATTGAGCTGATAAAGGACCCCCAAAATGCAAGCAGGAATCGTGGGTTTGCTTTTGTTTTGTATTATAATAATGCCTGTGCTGATTATTCTCGGAAAAAGATGTCAAATGCAAACTTTAAGCTGGATGGTAATACCCCCACTGTCACTTGGGCAGATCCAAAGAACTCACCTGATCATTTGGCCTCATCACAAGTTAAAGCTCTTTATGTAAAAAACATACCTGAGAATACTACTACTGAACAACTGAAGGAACTGTTCTGCCAACATGGAGAAGTAACTAAAGTGGTCATGCCTCCTGGGAAAGCTGGAGGCAAACGTGACTTTGGTTTCATTCATTATGCTGAGAGGTCAAGTGCGTTGAAGGCAGTGAAAGATACAGAAAAATATGAAATAGATGGCCAAGCGTTGGAAGTTGTTCTAGCAAAGCCTCAAGCTGATAAAAAAACTGATGGAGGCTATGCCTACAATCCTGGGCTTCAACCGCATCCTGGGTATGGTGGTTTCTCAGGAAATCTATACGGGTCTATGCGGCCTGCATATGGTGCTACTGCTGGTTATCAACAACCAGTGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAGATGGTTCCAATGGTATTACCTGACGGTCGTATCGGCTATGTCCTTCAACAGCCAGGCGCGCAGATGTCAGCTCCTCCCCGACCCCAGAGGAACAATGGCCGAAGCAGTCAGCCAGGGCGAGGGGGAGGCAGCGGCAATGATGAGGGTAATCGCAGTAGAAGGTATCGACCTTATTAA 1425 0.4393 MSEGAEVDERVDFDEENYMEEIEDDVEEQIYDEGVDGGGDENEENVEEHEYEDSVAEPCGKDQYPEADGSDIGTDSVENEQKPFSIDENEKEIHEELLALPPHGSEVFIGGLPRDTCEDDLREMCEPIGDILEVRLMKDRDTGDVKGYAFVAFKTKEIAQKAIEELHSKEFKGKTLRCSVSETKHRLFIGNVPKSWTEDEFRKVIMGVGPGVENIELIKDPQNASRNRGFAFVLYYNNACADYSRKKMSNANFKLDGNTPTVTWADPKNSPDHLASSQVKALYVKNIPENTTTEQLKELFCQHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQALEVVLAKPQADKKTDGGYAYNPGLQPHPGYGGFSGNLYGSMRPAYGATAGYQQPVIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGAQMSAPPRPQRNNGRSSQPGRGGGSGNDEGNRSRRYRPY 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00156 474 CDD RRM_SF 107 179 - -
Accr6g00156 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 183 IPR000504 GO:0003723
Accr6g00156 474 MobiDBLite consensus disorder prediction 434 474 - -
Accr6g00156 474 MobiDBLite consensus disorder prediction 8 51 - -
Accr6g00156 474 Gene3D - 8 185 IPR012677 -
Accr6g00156 474 Gene3D - 269 395 IPR012677 -
Accr6g00156 474 SUPERFAMILY RNA-binding domain, RBD 102 267 IPR035979 GO:0003676
Accr6g00156 474 MobiDBLite consensus disorder prediction 1 83 - -
Accr6g00156 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 350 IPR000504 GO:0003723
Accr6g00156 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 253 IPR000504 GO:0003723
Accr6g00156 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 177 IPR000504 GO:0003723
Accr6g00156 474 SUPERFAMILY RNA-binding domain, RBD 275 381 IPR035979 GO:0003676
Accr6g00156 474 SMART rrm1_1 186 263 IPR000504 GO:0003723
Accr6g00156 474 SMART rrm1_1 281 353 IPR000504 GO:0003723
Accr6g00156 474 SMART rrm1_1 106 179 IPR000504 GO:0003723
Accr6g00156 474 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 185 - -
Accr6g00156 474 Gene3D - 186 266 IPR012677 -
Accr6g00156 474 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 186 266 - -
Accr6g00156 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 267 IPR000504 GO:0003723
Accr6g00156 474 MobiDBLite consensus disorder prediction 438 459 - -
Accr6g00156 474 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 12 460 - -
Accr6g00156 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 357 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00156 Accr-Chr6 2627838 2633173 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00156 107 380 Eukaryotic Initiation Factors Gene Family AT1G22760 26.645 3.95e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00156 K13161 - gmx:100790907 762.681