Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00149 ATGGACGACCTTCCCCTCTACCACTCCTCTCCGTCCTCCCTACTCTCCTTTTCTCACTCTCCGCCTCCGCCTCCGCCTCCATCCTCCTCTCCTCTTCAGAACAAGCTTCAACCCTTACTTCAATCCCAGCCTCACTCCTGGCTCTACGCCATTTTCTGGCAAACCTCCCACGACGACCGCGCCCGCTTCCGCCTCTCCTGGGCCCACGGTCACTTCCACGGCTCCGATCATCATCTTCCCCGCCATAACAACAACAACAACCTATTCAAAGGTCTTGAATCTCTCGTCGACGACAACCTTAACGATGCCGAGTGGTTCTACGTCATGTCCTTGACTCGCACTTTTCCTCTCTCTCCTGATTCCTCCGCTGCTTCCCTCCCCTCCAAGGCCTTCTCCTCCGGTTCTCCCCTCTGGCTCAATATCAGCCACCAAGACCTTCAATTTCACGGCTGCGACAGAGCCAAAGAAGCTTCCCTGCATGGGATTCGAACCCTCATCTGTGTTCCCACCTCCCACGGGGTTCTCGAAATGGGTTCAACTGAAATCATTCCCAAGAACTCCACTCTCATCCAACAAGTTAAATCTCTGTACGGCTCCTCCGATCTGATCACCCCACTCCTCACACCCTCTGATAATCAGCCCGAGAAAGTTGATTTCTTGGACGTCGATGAGACTATTTCTTTTGCCGACATTGGCATTATCACTGACCCGCCCGAAGTAGAAGATGAAAAGACACTGGTAAATTCATCATGTGGTAATAATAAATCCCGAAAGAAAGATCCTCGTCTCCCGCTCAGATCTTACGTGGACTCAGAGCATTCTCATTCGGATTCCGACGGGCCTATCATAGAGAAAACGCCGCCAAAGAAGAGAGGAAGAAAGCCCGGAGTGGAACGCGAGACGCCGCTCAACCACGTGGAGGCTGAGCGGCAGCGCCGGGAGAAGCTGAACCACCGTTTCTACGCTCTACGCGCCGCGGTCCCGCATGTGACGAGGATGGACAAGGCGTCGCTGTTATCGGACGCTGTCTCGTACATCAACGAGCTCAAAGCCAAGATCGAGAAACTTGAGTCGCAGGCTCAAAGGGAATCCACCATTATGAACAGTGGCAGGAAGGTGAAGCTGGAAATGGCAGACACAGTGGAGTCGACGGTGGAGCAGGCCAGGCCCAGCGGGCGGTGCTTGAGGCAGGGCTGGGGCCTGACCGGGCTGGAGGTGGACGTCAGGATCATGGGCCCGGATGCGATGATCAGAGTTCAGTCGGAGAACAGGAACCACCCCGGAGCGCGGCTGATGGACGCGCTGCGAGACTTAGAGCTGAGAGTACACCATGCGAGCATGTCATGCGTCAACGACATCATGCTTCAAGACGTCGTCGTTAAGATCCCTCAAGGTCTGAGAAGCGACGAGAACCTCATTAAATCTGCTATTCTCAGGAGACTGGACTCATAG 1452 0.5468 MDDLPLYHSSPSSLLSFSHSPPPPPPPSSSPLQNKLQPLLQSQPHSWLYAIFWQTSHDDRARFRLSWAHGHFHGSDHHLPRHNNNNNLFKGLESLVDDNLNDAEWFYVMSLTRTFPLSPDSSAASLPSKAFSSGSPLWLNISHQDLQFHGCDRAKEASLHGIRTLICVPTSHGVLEMGSTEIIPKNSTLIQQVKSLYGSSDLITPLLTPSDNQPEKVDFLDVDETISFADIGIITDPPEVEDEKTLVNSSCGNNKSRKKDPRLPLRSYVDSEHSHSDSDGPIIEKTPPKKRGRKPGVERETPLNHVEAERQRREKLNHRFYALRAAVPHVTRMDKASLLSDAVSYINELKAKIEKLESQAQRESTIMNSGRKVKLEMADTVESTVEQARPSGRCLRQGWGLTGLEVDVRIMGPDAMIRVQSENRNHPGARLMDALRDLELRVHHASMSCVNDIMLQDVVVKIPQGLRSDENLIKSAILRRLDS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00149 483 Pfam Helix-loop-helix DNA-binding domain 304 349 IPR011598 GO:0046983
Accr6g00149 483 MobiDBLite consensus disorder prediction 255 311 - -
Accr6g00149 483 Coils Coil 339 366 - -
Accr6g00149 483 SMART finulus 306 355 IPR011598 GO:0046983
Accr6g00149 483 MobiDBLite consensus disorder prediction 17 32 - -
Accr6g00149 483 MobiDBLite consensus disorder prediction 240 311 - -
Accr6g00149 483 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 292 361 IPR036638 GO:0046983
Accr6g00149 483 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 32 196 IPR025610 -
Accr6g00149 483 Gene3D - 299 374 IPR036638 GO:0046983
Accr6g00149 483 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 300 349 IPR011598 GO:0046983
Accr6g00149 483 PANTHER MYC 21 480 IPR045084 GO:0003700|GO:0006355
Accr6g00149 483 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00149 Accr-Chr6 2540741 2542192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00149 32 481 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 33.395 3.99e-89 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr6g00149 bHLH-MYC_N 1.4e-38 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00149 - K13422 pcin:129288951 648.277