Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00145 ATGTTAGATCAACATCATCACCATGCTGCCATGGAATATTCTCATTTAGCAGAAGCAGAAGCTTATAGCAGTATAGTTCCATCATCAGGAGGGGTCACAACAAGGAAGAGGAAGGCCAACAAAATCCAGAGAAGGTTCAGTGATGATCAGATCAGGTCACTGGAATCCATGTTCGAGACAGAGTCAAGGCTTGAGCCGAGGAAGAAGGTTCAGCTTGCAAGGGAGCTTGGGTTGCAGCCAAGACAGGTAGCTATCTGGTTCCAGAACAAAAGGGCAAGATGGAAGTCTAAGCAGATTGAAAGAGACTATAGCATACTTAGAGCTAATTACACAAACTTGGCCTCAAGGTTCGAAGCTCTGAAGAAGGAGAAGGAAGCATTGCTAATTCAGTTGCAGAAGCTGAATGATCTAATACAGAAGCCAAACGAGGAAGCTCATCAGGGCTATAATACAGAAGTCAAACCAGTAAACAGCATGGACAGTGTATCAGAAAATGGGGACAACATTAAAGTGAAGGCTGAGGAAAATCCAAGCTCAACAACAATGGAGAGATCAGAGCAGGTGGTGGGTGTTCTGTCAGATGATGACAGCAGTATAAAAGCAGAATACTTTGGGCTTGAAGATGAACCTAATACTCTTCTGAATTTCGCGGAGCAAGCAGACGATTCCCTCAATTTTGATTCTGATGAACTCTTAGATCAGTCTGGTGTTGGTTACCAGTGGTGGGACTTTTGGTCCTGA 741 0.4399 MLDQHHHHAAMEYSHLAEAEAYSSIVPSSGGVTTRKRKANKIQRRFSDDQIRSLESMFETESRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQIERDYSILRANYTNLASRFEALKKEKEALLIQLQKLNDLIQKPNEEAHQGYNTEVKPVNSMDSVSENGDNIKVKAEENPSSTTMERSEQVVGVLSDDDSSIKAEYFGLEDEPNTLLNFAEQADDSLNFDSDELLDQSGVGYQWWDFWS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00145 246 SUPERFAMILY Homeodomain-like 23 98 IPR009057 -
Accr6g00145 246 PRINTS Lambda-repressor HTH signature 68 77 IPR000047 GO:0003677
Accr6g00145 246 PRINTS Lambda-repressor HTH signature 77 93 IPR000047 GO:0003677
Accr6g00145 246 Coils Coil 110 137 - -
Accr6g00145 246 ProSitePatterns 'Homeobox' domain signature. 72 95 IPR017970 GO:0000981|GO:0006355
Accr6g00145 246 Pfam Homeobox associated leucine zipper 97 138 IPR003106 GO:0006355|GO:0043565
Accr6g00145 246 CDD homeodomain 41 98 IPR001356 GO:0003677
Accr6g00145 246 Gene3D - 27 100 - -
Accr6g00145 246 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 39 182 IPR045224 GO:0003700
Accr6g00145 246 SMART HOX_1 40 101 IPR001356 GO:0003677
Accr6g00145 246 Pfam Homeodomain 44 95 IPR001356 GO:0003677
Accr6g00145 246 ProSiteProfiles 'Homeobox' domain profile. 37 97 IPR001356 GO:0003677
Accr6g00145 246 FunFam Homeobox-leucine zipper protein ATHB-7 25 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00145 Accr-Chr6 2444306 2445254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00145 16 246 Homeobox Transcription Factor Family AT2G46680 49.225 1.05e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr6g00145 Homeodomain 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00145 K09338 - qsa:O6P43_027419 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr6g00145 6 2444306 2445254 Accr6g00145 6 2444306 2445254 ECH