Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00139 ATGACATCAGAAGCCATTTCTTTTATTATAGAAACTCTTGCTGAGTTAGTAGTTGGTGCTAGTGAAGTCCTCGTGAAGAATGATAGTTTCAAGGAACTTGCAGCTTACTTGGAAAGAATTGTACCAATCTTGAAAGAATTGAAGACAAAAAATGTCACTAATTCTGAGGCCTTTACCAATGCCATTGATGTTCTGAATCGTGAAACTAGAAATGCGAACAAACTGACTCAAGAATGCTGCAAAAGGAGCAAGGTATACCTGCTAGTGAACTCCATGTCGATCAATAGGCGTTTACAGAAGACAATAGGTGAGATCACCAGGGCACTTAGCCTTCTTCCTTTGGTCACATCAGAAATTTCTTCTAACACAGTTGAAGCAATTGGAAAGCTATGTGATGATATGCAGAAAGCTGAGTTCAAGACAAGTGCAGCAGAAGAGAAGATTTTGGAGAAAATCGAGTCAGGGATAGTGGAAAACAGCGTTGATCGCTCCGATGCAAATAATTTGCTGATCCAAATTGCTGAGGCTGTTGGGGTTACTACCGAGAGGTCAACATTGAGGAAGGAACTTGAAGATTTTAAGATTGAAATTGAAAATTGCCGCCTTAGGAAAGACCAGGCTGAAGCCTTGTATATGGATCAGATCATTGCTTTGTTGGAGAGAGGTGATGCAGCATCATCACCTAAGGAAAAGGAACTTAAGTACCTTTCAAAGAGAAACTCTTTGGGAAGTCAAACATTGGAGCCACTCCAATCATTTTATTGCCCTTTAACTCAGCAAGTTATGGAGGACCCTGTTGAAACTTCATCAGGGAAGACATTTGAGAGAAGTGCCATAGAAAAATGGTTTGCTGAAGGAAATAGACTATGTCCTCTCACGATGACTCCTTTAGACACATCAGTTTTAAGGTCTAACAAGGTCTTGAAGCAGTCAATAAGAGAGTGGAAGGATAGGAATACAATGAGAACAATTGTTTTGACAAAAGAAAAACTTCAGTCACAAGATGATGATGAAGAAGTTTTATATTGTCTGGGTACTCTACAGGATTTGTGTGAACAAAGTGATCTGCATAGAGAGTGGTTAGTGCTGGAGAATTACATACCGGTTCTTATCCAGATTCTTGGAGCTAAAAACCATGTTGTAAGAAACCGCTCTCTAGCTATCCTTAACATGTTGGCAAAGGATAGTGATGATGCTAAGGAAAGAATTGCCAACATTGATGATGCAGTTGCATCCATTGTTCATTCACTTGCGCGCCGTGAGGGGGAAAGGAAGCTGGCAGTGGAATTACTGCTGCAATTATCCAAATATGATTTGGTACGAGAGGAAATTGGAGAGGTTCAAAGTTGTATACTACTACTTGTGACTATGTCTAGCAGTGACGATAATGAAGCTGCCAGAAATGCAAAGGAGCTTTTGGAGATTCTTTCATACTCTGATAACAATGTTTTAAAGATGGCTAGGGCAAATTATTTCCACCATCTTGTACATCGTCTTTCCACAGGACGCGATGATGTGAAAATGACTATGGCAACAGCTCTATCAGAAATGGAGTTAACCAACCGCAATAAAGCATCCTTATTTGAGGCTGGTGTGTTCGGTCCTCTTCTTCATTTAGTTTCACATTCTGATATTCAAGTGAAAACAGTGGCCATTAGGGCTTTCAGGAACCTATCCACTTTAAAGAAAAATGGACTGGAGATGATTCGACAAGGTGGAGTACGCCCAATACTTGACCTTCTATTCCAGCCTGGCTTGATATCTGTAAGTTTAAAGGAACACATATCAGCCCTAATCATGCAACTTGCAGCTTCAACAATCTCTGAAGATGACAAGGCACCAACTTTAATGTTAGAATCTGATGAAGATGCTTTAAAACTCTTCTCTTTAATTAGTTTCACGAGGCCGGATGTGCAGCAAAACATTTTACAGACCTTCTATGCATTGTGTCAGTCCCCATCAGCCTCATTTATCAGAAGCAAGCTAAGAGAGTGCTCAGTGTTTGAAGTTTTGGTCCAGCTCTGTGAGCATGAAAATCTAAACCTAAGGGCAAGTGCTGTAAAGCTGTTTGCTTGCTTGGTATGCGAAGAAGCTAGCATGCTGGAAAACATAAATCAGAAATGTGCTGAAGCTATGCTCAAGATCCTCATATCTTCTTCAGATAAAGAGGAAATTTCATCTGCACTGGGCATAGTACATTATCTTCCAAAAAATCACCAAATCACAGAGTGGCTTCTAGATGCTGGTGCACTTCCTATCATATATAATCACCTCCAAGATTTGAAGGACTTAGATTACCAAGAGAGCAAGTTAATAGAAAATGCCATTGGGGCCTTGAGTCATTTCACTACTTCAACAAACCCAGAATGGCAAAAGATTGCTGCTGAAACTGGTGTTATATCAGTTCTAGTGAAGGTACTTGAATGTGGAACTGCATCAACAAAACGGCAAGCAGCATTATCTCTAGCTCAATTTTCAAAGAGTTCACTTGGGCTGAGCAGGCCAGTGTCCAAGCCCAAGGGCTTTTGGTGCTTCTCAGCTCCAACACAAATTAGCTGCTTGGTTCATGGAGGAATATGTACTGTGAAGTCATCATTTTGCCTTGTTGAGGCTGATGCAGTGAGGCCATTAGCGAGGACACTTGGGGAATCTGATCCAGAAGCTTCGGAGGCTTCATTGGAGGCACTATTAACATTATTTGAAGGAGAAAGACTACAAGGTGGTAGTAAAGTGCTTGAAGAAGCCAATGTCATACCACTAATAATAAAATTTCTTAATTCCCCATCCCACGGACTACAGGAGAAGTCTCTGCATGCTTTGGAAAGGTTTTTTCGGCTATCGGAGTTCAAACGGTTGTATGGAGCCTCAGCTCATATGCCTCTTGTTGATTTAACTCAAAGAGGTACCAATCGTGTGAGATCTCTGGCAGCAAGAACTTTGGCACATTTAAACGTGCTTCAGTATCAGTCTTCTTATTTCTAA 2982 0.4085 MTSEAISFIIETLAELVVGASEVLVKNDSFKELAAYLERIVPILKELKTKNVTNSEAFTNAIDVLNRETRNANKLTQECCKRSKVYLLVNSMSINRRLQKTIGEITRALSLLPLVTSEISSNTVEAIGKLCDDMQKAEFKTSAAEEKILEKIESGIVENSVDRSDANNLLIQIAEAVGVTTERSTLRKELEDFKIEIENCRLRKDQAEALYMDQIIALLERGDAASSPKEKELKYLSKRNSLGSQTLEPLQSFYCPLTQQVMEDPVETSSGKTFERSAIEKWFAEGNRLCPLTMTPLDTSVLRSNKVLKQSIREWKDRNTMRTIVLTKEKLQSQDDDEEVLYCLGTLQDLCEQSDLHREWLVLENYIPVLIQILGAKNHVVRNRSLAILNMLAKDSDDAKERIANIDDAVASIVHSLARREGERKLAVELLLQLSKYDLVREEIGEVQSCILLLVTMSSSDDNEAARNAKELLEILSYSDNNVLKMARANYFHHLVHRLSTGRDDVKMTMATALSEMELTNRNKASLFEAGVFGPLLHLVSHSDIQVKTVAIRAFRNLSTLKKNGLEMIRQGGVRPILDLLFQPGLISVSLKEHISALIMQLAASTISEDDKAPTLMLESDEDALKLFSLISFTRPDVQQNILQTFYALCQSPSASFIRSKLRECSVFEVLVQLCEHENLNLRASAVKLFACLVCEEASMLENINQKCAEAMLKILISSSDKEEISSALGIVHYLPKNHQITEWLLDAGALPIIYNHLQDLKDLDYQESKLIENAIGALSHFTTSTNPEWQKIAAETGVISVLVKVLECGTASTKRQAALSLAQFSKSSLGLSRPVSKPKGFWCFSAPTQISCLVHGGICTVKSSFCLVEADAVRPLARTLGESDPEASEASLEALLTLFEGERLQGGSKVLEEANVIPLIIKFLNSPSHGLQEKSLHALERFFRLSEFKRLYGASAHMPLVDLTQRGTNRVRSLAARTLAHLNVLQYQSSYF 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00139 993 ProSiteProfiles U-box domain profile. 248 322 IPR003613 GO:0004842|GO:0016567
Accr6g00139 993 Pfam Armadillo/beta-catenin-like repeat 521 559 IPR000225 GO:0005515
Accr6g00139 993 SUPERFAMILY ARM repeat 329 983 IPR016024 -
Accr6g00139 993 Gene3D - 854 988 IPR011989 -
Accr6g00139 993 SMART arm_5 561 604 IPR000225 GO:0005515
Accr6g00139 993 SMART arm_5 354 393 IPR000225 GO:0005515
Accr6g00139 993 SMART arm_5 905 945 IPR000225 GO:0005515
Accr6g00139 993 SMART arm_5 787 827 IPR000225 GO:0005515
Accr6g00139 993 SMART arm_5 520 560 IPR000225 GO:0005515
Accr6g00139 993 SMART arm_5 861 901 IPR000225 GO:0005515
Accr6g00139 993 SMART arm_5 738 784 IPR000225 GO:0005515
Accr6g00139 993 Gene3D - 328 421 IPR011989 -
Accr6g00139 993 Gene3D - 422 837 IPR011989 -
Accr6g00139 993 Coils Coil 183 210 - -
Accr6g00139 993 Gene3D - 4 116 IPR036537 GO:0007166
Accr6g00139 993 SMART Ubox_2 252 315 IPR003613 GO:0004842|GO:0016567
Accr6g00139 993 SUPERFAMILY RING/U-box 239 320 - -
Accr6g00139 993 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 993 - -
Accr6g00139 993 CDD RING-Ubox_PUB 253 302 IPR045210 -
Accr6g00139 993 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 327 IPR013083 -
Accr6g00139 993 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 531 573 IPR000225 GO:0005515
Accr6g00139 993 Pfam U-box domain 253 319 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00139 Accr-Chr6 2275489 2280361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00139 251 993 U-box Gene Family AT1G76390 27.771 2.94e-64 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00139 - - qsa:O6P43_027410 1285.01