Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00123 ATGAAGCTTGAGTTGGGCTTAGGAGGTGTGTTGTGGAATGATGAAGAAAAAGCCATGGTTGCATCTGTTCTGGGAAATCGAGCTTTTGAATACTTGTTCACAAACCCTGTGGCGAACGACAATTTGTTAATGACAATCGGAAGCGACGAAAGTTTGCAGAACAAGCTTTCGGATCTCGTGGACTGTCCAAACGTATCAAATTTCAGTTGGAACTACGCGATTTTCTGGCAAATATCACAGTCGAAGAATTCTGGGGATTGGGTTTTGGGTTGGGGAGATGGATGCTGCAGAGAACCGAAGGGAGAAGAAGAAGAAGACAAAGTTAGAAGACTTCCTACTCTTCACCCGGAAAAAGATGAGATGCAGCAGAGGATAAGGAAAGGGGTGCTTCAGAAGCTCCATACAACATTTGGGGGTTCTGATGAAGACAATTATGCCTTTGGATTAGATAGGGTTACTGACACAGAAATGTTCTTCCTGGCTTCCATGTACTTCTCCTTCCCTCGAGGCCATGGTGGTCCTGGTAAATGCCTTGCTTCGGGGAAGCATGTTTGGTACTCTGATGCTCTTGGCTCTGATTACTGTGTGAGATCATTTTTGGCAAAATCAGCTGGAATTCAGACCATAGTTTTGGTCCCTACTGACGTAGGGGTTGTGGAATTGGGTTCTGTGAGGACAGTAGCTGAGAGCTCAGAATTGTTGCAGGTGATAAAATCAGAGTTTTCTGTGCAATTGCCAATTCCTAGGGTTTCCCCACTTTCGCCATTGCCTGTTGCGGTGAATGAGAAGAGAGATGAAAATGGTGTCTTTCATGGTTTGCCAGTGGGGGATAAGGTGGATGGAGTTCCAAAGATTTTTGGACAGGACTTGAACTCGTTAAACACTGCTCGTCCCCATTTTAGAGAGAAGCTTGCTGTGAGGAAAATGGAGGAGAGGCCTTGGGCAGGTCGTAGCCAACCCAACGGCAATAATATTATCTTTCCAAGTGTGCGAAATGGTATTCATGGATCGAGCTGGGCTGCTAATCAGGGCGGGAAACAGGTGAGCCCAACTGAGGCTTATCCTTCAACGGCTTCGGGTTGCAACGTACCGGAGGGAGTTAACCAGTTTAGGCAAGATTTTCGGCTTAGCAACTACCATCCACAAAGGCAGGTGCAAATGCAAATTGATTTCTCTGGAACTTCAAGGCCATCTGTGAGACCAATCAATGCTGAATCAGAGCTATCTGATGTTGAAGCTTCATGCAAAGAAGAGCAGCTAGGTGCAACAGATGAAAGGAGGCCGAGGAAACGGGGTAGAAAGCCTGCCAATGGAAGGGAAGAACCCTTGAATCACGTGGAAGCAGAGAGGCAGAGGCGTGAGAAACTGAATCAGCGTTTCTATGCTCTTAGATCTGTTGTACCCAATATATCCAAGATGGACAAGGCTTCTCTGCTGGGAGATGCCATTGCCTATATCCATGAGCTTCAAGCAAAACTCAAGATCATGGAATCTGAGAGGGAGAGGTCTGGAAGCACTTCAAGGGATGTGCCAGCATCAGTGGCTGATCCAAAAGTAGAAAATCACAATCATTCTCCCAATGTTGATATTAAAGCTACCCAGGATGAGGTAATAGTAAGGGTGAGCAGCCCTCTCAATGCTCATCCTATTTCAAGGGTTATCCAAAAGTTAAAAGATGCACAAATTAATGTTGTTGACTTGAAACTTGCAACTGCAAATGACACCATCTTCCATTCGTTTGTGATCAAGTCTCAAGGATCTGAGCTGCTGACGAAGGAGAAGTTGATTGCAGCATTATCTTGA 1803 0.4559 MKLELGLGGVLWNDEEKAMVASVLGNRAFEYLFTNPVANDNLLMTIGSDESLQNKLSDLVDCPNVSNFSWNYAIFWQISQSKNSGDWVLGWGDGCCREPKGEEEEDKVRRLPTLHPEKDEMQQRIRKGVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCLASGKHVWYSDALGSDYCVRSFLAKSAGIQTIVLVPTDVGVVELGSVRTVAESSELLQVIKSEFSVQLPIPRVSPLSPLPVAVNEKRDENGVFHGLPVGDKVDGVPKIFGQDLNSLNTARPHFREKLAVRKMEERPWAGRSQPNGNNIIFPSVRNGIHGSSWAANQGGKQVSPTEAYPSTASGCNVPEGVNQFRQDFRLSNYHPQRQVQMQIDFSGTSRPSVRPINAESELSDVEASCKEEQLGATDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYIHELQAKLKIMESERERSGSTSRDVPASVADPKVENHNHSPNVDIKATQDEVIVRVSSPLNAHPISRVIQKLKDAQINVVDLKLATANDTIFHSFVIKSQGSELLTKEKLIAALS 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00123 600 FunFam Transcription factor bHLH13 433 507 - -
Accr6g00123 600 Gene3D - 433 504 IPR036638 GO:0046983
Accr6g00123 600 PANTHER MYC 41 598 IPR045084 GO:0003700|GO:0006355
Accr6g00123 600 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 443 503 IPR036638 GO:0046983
Accr6g00123 600 MobiDBLite consensus disorder prediction 498 526 - -
Accr6g00123 600 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 440 489 IPR011598 GO:0046983
Accr6g00123 600 CDD bHLH_AtAIB_like 437 502 - -
Accr6g00123 600 MobiDBLite consensus disorder prediction 338 360 - -
Accr6g00123 600 SMART finulus 446 495 IPR011598 GO:0046983
Accr6g00123 600 Pfam Helix-loop-helix DNA-binding domain 444 490 IPR011598 GO:0046983
Accr6g00123 600 MobiDBLite consensus disorder prediction 405 451 - -
Accr6g00123 600 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 241 IPR025610 -
Accr6g00123 600 MobiDBLite consensus disorder prediction 410 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00123 Accr-Chr6 1977778 1979580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00123 5 600 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 50.000 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr6g00123 bHLH-MYC_N 1.6e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00123 - - qsa:O6P43_017798 811.601