Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00122 ATGGAATCCGAAACACGACGGAAAATCGAAGAAACGGTGCTGGATGTACTGAAGAATTCCAATATTGATGAAGCGACTGAGTTCACTGTCCGACTCGCGGCCTCGGAGCGACTCGGGATGGATCTTTCTGACTCGGAACACAAACTGCTTGTGAGAGGCATTGTTGAGTCGTATCTGCTCGCTATCGCTGAGCAAGAAGATGGGAGGGTTCCGGCGTCTGAGCCGAGTGCTCCACAAGGGGTGGTGCAGTGTGAGCAGGTGGCGAAGCCAAACAAGGAGGTTACGAAGGACTCCGAGCACATAATATGCCAGCTATCAAACAAGAGGAATGTGGCGGTTCATGATTTCAGAGGGAAAAAGTTAGTCTCAATCAGGGACTATTATGTGAAAGATGGAAAACAGCTTCCTTCAGCTAAAGGGATAAGTTTGCAGTCTGAACAATGGTCTGTCTTCAAGAAAAGTGTCCCTGCTATAGAGGAAGCCATTGCGAAGATGGAAGCAAAGATGGGATTCAAGGTTCACAGTAAGGAAAATGGAGATTTGCTGAACCCAACTCTTAGCAAGCAAAACGGAGACATGCTGGACCTAATTATTGAAGCTGCTCCTGCTGAACCTGTCCCTATTGAAATCGGTCGCTTTGATGGGAAAAATTACCATGGCTGGATTCAGCAGATGGAATTACTCTTAAAGCAACTAAAGATTGCATATGTTCTCACGGAACCATGCCCAAATGCTACGCCAGAACCACATTCAAGCGCTAAAGAAGTTGCTGAAGCCAGAGCAGCAGAAAAGAGGTGGATGAATGATGATTTCCTGTGCCGTCGCAACATCTTGTGCTATTTATCCGATCGTCTGTTCAGTCTGTATGCAAATAGAAAAATGACTGCTAAAGAACTGTGGGAAGAGTTAAAACAAGTTTATTTGTACGAGGAATTTGGAACAAAGAGATCACTAGTAAAAAAGTACATTGAATATGAGTTCGTTGAGGAAAAATCTATCTATGAGCAAGCCCGAGACCTAAATACCATTGCAGACTCTGTTGTCTCTTCTGGAATGATGATCGAAGAAAACTTCCATGTCAGTGCCATCATCTCCAAGCTTCCCCCATCTTGGAAGGATGTTTGTATCAAGCTAATGCGCGAAGAGCATCTACCATTTTGGATGTTAATGGAATGTTTGTGGTCGGAGGAAGAATCTCGCAATCAAGTCAAACGAGGGGGTGGTGAAGGTGAACCTTCCCGTAATAACAACACAGGCCATCATGAGGCCAGAAAATCTGTTCAAAGAGAGGCGGATACGAGTCTTTCAAGCAGCATGCATGGCCGGAGGAATAGACCGGACATGAATGACAAGAGTACGGCCTGTGACGTCTGTGGCAAGAAAGGGCATCTTTCCAGAAACTGTTGGAGAAGATCTGACAATCAAGCTAGAGGAAGAAGAATAGAAGAAAATGAGCCCTCTACACGGGCGATTTCACAGCTTAACTTGGTTGGCGTCTGTAACACCCCGTTTTATAAAGCGTTTTTGAAATAA 1533 0.4508 MESETRRKIEETVLDVLKNSNIDEATEFTVRLAASERLGMDLSDSEHKLLVRGIVESYLLAIAEQEDGRVPASEPSAPQGVVQCEQVAKPNKEVTKDSEHIICQLSNKRNVAVHDFRGKKLVSIRDYYVKDGKQLPSAKGISLQSEQWSVFKKSVPAIEEAIAKMEAKMGFKVHSKENGDLLNPTLSKQNGDMLDLIIEAAPAEPVPIEIGRFDGKNYHGWIQQMELLLKQLKIAYVLTEPCPNATPEPHSSAKEVAEARAAEKRWMNDDFLCRRNILCYLSDRLFSLYANRKMTAKELWEELKQVYLYEEFGTKRSLVKKYIEYEFVEEKSIYEQARDLNTIADSVVSSGMMIEENFHVSAIISKLPPSWKDVCIKLMREEHLPFWMLMECLWSEEESRNQVKRGGGEGEPSRNNNTGHHEARKSVQREADTSLSSSMHGRRNRPDMNDKSTACDVCGKKGHLSRNCWRRSDNQARGRRIEENEPSTRAISQLNLVGVCNTPFYKAFLK 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00122 510 MobiDBLite consensus disorder prediction 415 429 - -
Accr6g00122 510 Pfam Transcriptional Coactivator p15 (PC4) 103 153 IPR003173 GO:0003677|GO:0006355
Accr6g00122 510 MobiDBLite consensus disorder prediction 401 453 - -
Accr6g00122 510 Pfam DEK C terminal domain 5 59 IPR014876 -
Accr6g00122 510 Pfam gag-polypeptide of LTR copia-type 266 402 - -
Accr6g00122 510 FunFam RNA polymerase II transcriptional coactivator KELP 94 166 - -
Accr6g00122 510 Gene3D Transcriptional Coactivator Pc4; Chain A 93 169 IPR009044 GO:0003677|GO:0006355
Accr6g00122 510 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
Accr6g00122 510 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 167 IPR045125 GO:0003713|GO:0060261
Accr6g00122 510 Gene3D - 427 482 - -
Accr6g00122 510 SUPERFAMILY ssDNA-binding transcriptional regulator domain 102 164 IPR009044 GO:0003677|GO:0006355
Accr6g00122 510 ProSiteProfiles Zinc finger CCHC-type profile. 455 468 IPR001878 GO:0003676|GO:0008270
Accr6g00122 510 SUPERFAMILY Retrovirus zinc finger-like domains 436 473 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00122 Accr-Chr6 1958099 1962376 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Accr6g00122 Retrotran_gag_2 1.1e-14 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00122 - - qsa:O6P43_017796 512.301