Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00115 ATGATAATTAAGCGGGCAATGAAATTTGAAATTCCTAATCTGAAGCGATGCCAATTAGAGGAGCTCGATCCTGAAGACAGTACGTGTGCGACGAATCCCAAGAAACGGAGGGCAAATGGTTTTTTATCTACTGGTATGGCCGCTGAGGAAGAATATCTGAGCAGCAATTCTGGATTTCTTTGCAGTAAAGAATCGCATTGCGGTGGTGACTTACTGTCAAGCTCAGATTCCATGGAGTCGAATGCTAAAACAGTACTAAAACCAGGCTCAAAAAAAGTTTGGCCTCCATTATTGCGGTCGTCACGAGGTCGCCAGCAGATACTTCCATCGAGGTTCAGGGATTCGGTTATTGGTACGTTCAAGAATAAAATAATCCAAGTGGAGAACACATGTTCCATCTTTAAAGAAAGTGATTCTTTAGGGGAAGATGAGTCGAAGTTCCGTAGAATGGAATTTGCAAAACAGGGAGATAGTGTTAATAGTAGTCTCAGAAATTCAATATGTTGTCCATGTACCGAAATGGAGAAGGAAAGAGTCTTGGGTGCCTTAGATTCGAATGATTTCGACCCCGCGGAAACGGAGCATGCGAAATCCTTTAGTACTGTGAGAACAACAGTTAAAGAGGGTTGTTCATCGTTAGTTAAAGTTCAGAATTATGCGTCCGGACTTAATTCTGAAGGCACTTATCCAAAAACTAATGGGAAAGCTGAAAAGAGGACAGACGTTTACGAACTAGAGGATTTTGCTTGCGGTGATATAGTTTGGGCAAAATGCGGGAAGAGGTATCCGGCCTGGCCTGCTATAGTGATTGATCCCATCTTGCAAGCTCCCAAATCGGTCCTGAACTGTTGTGTTCCAGGTGCAATTTGCGTAATGTTTTTTGGGTACTCAAAAAATGGAAAGCAAAGGGACTATGCGTGGGCGAGAAAGGGAATGGTATTCCCCTTCATGGAATTCATGGACAGATTCCAGGGGCAGACCCGACTGTACAGGAGCAAACCAAGTGAATTTCGAATGGCACTAGAGGAGGCTTTGTTGGCAGAAGATGGTATTCTGGACTCACATTTGGGAGCATATGCAGTTACTAAAAGTAATTTTGAAGCTCATCCCAGTGTAGATTTGGAGGTTACGGGTTCATATGATGATCAGGAGGACAACTGCCAGGACCAGGATGCTAGACTTTGTGCTGGGTGTGGTTTGATGTTAACATGCAAAGTCATGAAGAAGACTAAGGATTCTAGTGCACAACTTTATTGTAGACATTGTCTGAAGTTGCAAAAATCCAAACAATACTGCGGCATTTGCAAAAAGATTTGGCACCACTCAGATGGTGGGAATTGGGTATGTTGCGATGGTTGCAATGTTTGGGTGCATGCAGAATGTGATAAAATCTCCAGCAAACTTTTAAAGGATCTGGAACTTACCGATTACTATTGCCCAGATTGCAAAACAAAAGTCAACTGTAAATTTGCTGAATCACGTTCATCCAATTCAAAAATCAATTCAGTAGAAAATAACCAAGAACATATGATACCAGAGGAGGTAACGGTGGTGTGCAATGGCATGGAAGGAATTTATATTCCAAGTCTTCATTCTGTTATGTGCAAATGTGGTTCATGTGGGTCAAGGAAGCAGACGCTGGGTGAATGGGAGCGGCATACAGGTTGCAGAGCCAAAAAATGGAAATTCAGCGTGAAAGTAAAAAGCACAATGCTACCCCTAGAAAAATGGATTACCGAGAACAATTCTCAAGCCGGGGTTTCCCTAAAGTTGGATCAGCAGAAGGTGCTTGCCTTTTTGCAAGAGAAGTACGAACCAGTTTTTGCAAAATGGACTACAGAAAGGTGTGCCATTTGTAGATGGGTTGAAGATTGGGATGACAACAAGATTATTATCTGTAACAGGTGCCAAATTGCTGTCCACCAAGAATGCTATGGGGTGAAGAACGTTAAGGATTTTACTTCTTGGGTTTGTAGAGCATGTGAAACTCCTGATGTTGAGAGAGAATGCTGCCTCTGTCCGGTAAAAGGTGGTGCTCTGAAGCCAACTGATATTGAAATGCTGTGGGTTCATGTAACATGCGCTTGGTTTCGTCCTGAAGTTATTTTCCAAAACCACGAGGCAATGGAACCTGCCATTGGAATCCTTAAAATTCCTCCAAATTCGTTTTCAAAGATTTGCATTATCTGTAAACAAAGCCATGGATCATGCTTAAGTTGTTCCAAATGTGCTACTTATTTTCATGTGATGTGTGCATCAAGAGCTGGATATAGCATGGAATTGCATTCCAAGGAGAAGAATGGGAGTCAAAGAACAACAAAGTTAATATATTGTGCAGTTCATAGGGCCCCAAAGCCGGATTCAGTACTCGTTGTGCACACACCCTTGGGTGTTTTCTCTCCCAGAACTGAACTTCAAAATCATAAGGGATGCTTCAGGGGATCGAGGCTAGTTTCACAAAAGGAGGTAGAACTTCTTGAAGAGCCCTCATCCTCTGAGATTAAAAAGTTTGAGCCACCCTCTGCTGCCCGATGTCGTGTTTACAGAAGGCCTCTCAATAAGAAAGTTGATAAGCCAGTAATTCACTTACTGGGAGGACCAAGATATCATTCTTTAAGTGCAATAACTCAGTTGAACAGTTATAAGGACGTTGAACATTCTGATGTATTTCCTTCGCTCAAGGAACGCCTTTATCATTTGCAGAATACTGTAAAGCATCAAGTTTGCTTTGGAAAATCTGGTATACATGGATGGGGCCTCTTTGCTCATCGAGATATAGAAGAAGGAGAGATGGTTGCTGAGTATTGTGGTGAGCAGGTAAGGCGGAGCATAGCTGATTTAAGGGAAGCAAAGTACCGGTCAGAAGGCAAAGATTGTTATCTGTTCAAGATCAGCGAGGAAGTGGTAATTGATGCAACAGATAAGGGCAACATAACACGCTTGATAAACCATTCTTGCGTGCCGAACTGCTATGCGAGGATTATAAGTTTGGACGACGAGGAGAGCCGAATTGTTCTTATTGCCAAGACCAATATCTCTGCTGGTGAAGAACTAACGTATGACTACTTGTTTGATCCGGATGAGCTTGATGAACTGAAAGTTCCCTGTCATTGCAATGCCCAAAATTGTAGGAAATTTATGAATTAG 3147 0.4239 MIIKRAMKFEIPNLKRCQLEELDPEDSTCATNPKKRRANGFLSTGMAAEEEYLSSNSGFLCSKESHCGGDLLSSSDSMESNAKTVLKPGSKKVWPPLLRSSRGRQQILPSRFRDSVIGTFKNKIIQVENTCSIFKESDSLGEDESKFRRMEFAKQGDSVNSSLRNSICCPCTEMEKERVLGALDSNDFDPAETEHAKSFSTVRTTVKEGCSSLVKVQNYASGLNSEGTYPKTNGKAEKRTDVYELEDFACGDIVWAKCGKRYPAWPAIVIDPILQAPKSVLNCCVPGAICVMFFGYSKNGKQRDYAWARKGMVFPFMEFMDRFQGQTRLYRSKPSEFRMALEEALLAEDGILDSHLGAYAVTKSNFEAHPSVDLEVTGSYDDQEDNCQDQDARLCAGCGLMLTCKVMKKTKDSSAQLYCRHCLKLQKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLLKDLELTDYYCPDCKTKVNCKFAESRSSNSKINSVENNQEHMIPEEVTVVCNGMEGIYIPSLHSVMCKCGSCGSRKQTLGEWERHTGCRAKKWKFSVKVKSTMLPLEKWITENNSQAGVSLKLDQQKVLAFLQEKYEPVFAKWTTERCAICRWVEDWDDNKIIICNRCQIAVHQECYGVKNVKDFTSWVCRACETPDVERECCLCPVKGGALKPTDIEMLWVHVTCAWFRPEVIFQNHEAMEPAIGILKIPPNSFSKICIICKQSHGSCLSCSKCATYFHVMCASRAGYSMELHSKEKNGSQRTTKLIYCAVHRAPKPDSVLVVHTPLGVFSPRTELQNHKGCFRGSRLVSQKEVELLEEPSSSEIKKFEPPSAARCRVYRRPLNKKVDKPVIHLLGGPRYHSLSAITQLNSYKDVEHSDVFPSLKERLYHLQNTVKHQVCFGKSGIHGWGLFAHRDIEEGEMVAEYCGEQVRRSIADLREAKYRSEGKDCYLFKISEEVVIDATDKGNITRLINHSCVPNCYARIISLDDEESRIVLIAKTNISAGEELTYDYLFDPDELDELKVPCHCNAQNCRKFMN 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00115 1048 ProSiteProfiles Zinc finger PHD-type profile. 613 664 IPR019787 -
Accr6g00115 1048 ProSiteProfiles SET domain profile. 906 1023 IPR001214 GO:0005515
Accr6g00115 1048 SMART PWWP_4 248 317 IPR000313 -
Accr6g00115 1048 CDD SET_SETD1-like 895 1044 - -
Accr6g00115 1048 Gene3D - 237 352 - -
Accr6g00115 1048 SMART set_7 906 1029 IPR001214 GO:0005515
Accr6g00115 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 423 489 IPR013083 -
Accr6g00115 1048 Pfam PHD-finger 431 484 IPR019787 -
Accr6g00115 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 665 783 IPR013083 -
Accr6g00115 1048 SMART PostSET_3 1032 1048 IPR003616 -
Accr6g00115 1048 SUPERFAMILY Tudor/PWWP/MBT 241 352 - -
Accr6g00115 1048 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1048 IPR025780 -
Accr6g00115 1048 Gene3D SET domain 892 1048 IPR046341 -
Accr6g00115 1048 FunFam Histone-lysine N-methyltransferase 665 784 - -
Accr6g00115 1048 SUPERFAMILY FYVE/PHD zinc finger 429 490 IPR011011 -
Accr6g00115 1048 CDD PHD_TCF19_like 432 482 - -
Accr6g00115 1048 ProSitePatterns Zinc finger PHD-type signature. 616 661 IPR019786 -
Accr6g00115 1048 PANTHER PHD FINGER PROTEINS 73 463 - -
Accr6g00115 1048 ProSiteProfiles Zinc finger PHD-type profile. 429 485 IPR019787 -
Accr6g00115 1048 SUPERFAMILY FYVE/PHD zinc finger 614 678 IPR011011 -
Accr6g00115 1048 ProSiteProfiles Post-SET domain profile. 1032 1048 IPR003616 -
Accr6g00115 1048 Pfam PWWP domain 251 346 IPR000313 -
Accr6g00115 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 664 IPR013083 -
Accr6g00115 1048 ProSiteProfiles Extended PHD (ePHD) domain profile. 667 782 IPR034732 -
Accr6g00115 1048 Pfam PHD-zinc-finger like domain 669 781 - -
Accr6g00115 1048 ProSiteProfiles PWWP domain profile. 250 319 IPR000313 -
Accr6g00115 1048 CDD PHD_ATX3_4_5_like 615 661 IPR042011 -
Accr6g00115 1048 Pfam SET domain 917 1022 IPR001214 GO:0005515
Accr6g00115 1048 FunFam Histone-lysine N-methyltransferase 881 1048 - -
Accr6g00115 1048 Pfam PHD-finger 628 662 - -
Accr6g00115 1048 CDD PWWP_AtATX3-like 251 350 - -
Accr6g00115 1048 SMART PHD_3 615 662 IPR001965 -
Accr6g00115 1048 SMART PHD_3 726 782 IPR001965 -
Accr6g00115 1048 SMART PHD_3 431 483 IPR001965 -
Accr6g00115 1048 SUPERFAMILY SET domain 899 1045 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00115 Accr-Chr6 1891800 1899326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00115 616 769 C2H2 Transcription Factor Family AT3G14740 34.783 1.40e-21 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr6g00115 zf-HC5HC2H_2 2.1e-29 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00115 - - pcin:129287753 1845.86