Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00109 ATGGATGCTAGGTCAGAAAAAGTTGTGAGGTTTAAGGACTGGAGTACAGAATCATCTTTCAATGCTGAGAAAACAATTTCTTCGGATGATGGATATCCTCAGAGAAAAGTTCGAACAAGACCAAGAGATGTGTTTAACAATATTAGAAGAGGAATCCAAAGAAGGTTGGAGAAGATTAAAAACTTGAGAAAACCTGCAAATGTGCATCCAGTAAGCGATGCAACTCTCAAGATATCGGCTTCGAAGACGAAGATTCTTGATCCACAGGGGTCTTTCCTTCAGAAATGGAACAAAATATTTGTGATAGCATGTGTACTAGCAGTATCTGTGGATCCTCTGTTCTTTTACATCCCAGTTATTGATGACAGTAGAAAATGCCTTTGTTGGAACGAACCATTGCAGATTATTGCCAGTGTTCTTCGTACATTCTTTGACCTTTTCTACATTCTGCACATGGCATTTAAGTTTCGAACGGGTTTTATCGCCCCTTCTTCTCGAGTTTTTGGTAGGGGAGAGCTCATTGATGATCCTAAGGCTATTGCAAAAAGATACTTATCTTCATACTTCATCATTGACATCCTATCGATTATTCCACTTCCACAGGGGTGTGTTTTGGCAACGAGACATTCAGTTACATCTGAAGAAAAGGACTGGTTAAAATATGCAATATTTATTCAATATGTCCCCAGATTTCTCCGAATCTATCCATTATTCACAGAAGTAACTAGAACTTCTGGCATATTGACTGAGACAGCTTGGGCCGGTGCTGCTTATAATCTCTTTCTCTATATGCTAGCAAGTCATGTGGTTGGAGCTTTCTGGTACCTGTTTTCATTAGAATCAGAGCTTCGGTGCTGGCACAGAGTATTGAGGAATGCTAATTTGACTACAGAAATAAGCTGTCAATACCCGATAGATCCACGTGCCACAACATTGATTTCCCTCAATGAGTCTTGTCCCTTCACGGATCCTGACGACATTGACGACCCCAAAGTCTTCAATTTTGGAATATATATCGACGCTTTAAAATCTCATGTGGTGGAATCAACCATGGATTTCCCTCAAAAGATCTTCTTCTGCTTTTGGTGGGGTCTGCGCAATGTAAGTTCTCTGGGACAAAATCTTAAGACAAGTACATACGTTGGGGAGATCATCTTTGCTTGCTTCATTGCAATCTTTGGGTTGGTTTTGTTCTCATTACTCATTGGAAACATGCAGAAATATCTACAATCTGTAACTGTTAGAGTTGAGGAAATGAGAATCAAGAGGAGAGATGCAGAGCGGTGGATGTCGCACCGTATGCTACCAGAGCACTTGAGGGAAAGAATCAGACGCTATGAGCATTACAAGTGGCAAGAAAACAGAGGTGTGGATGAGGAAAAATTAATCTGCAATCTTCCTAAAGATCTCAGAAGAGACATAAAGCGTCACCTTTGCTTGGATTTACTTAAAAAAGTGCCAATGTTTGAGACAATGGATGGGCAGTTGTTGGATGCGCTTTGTGATGGGCTGAAGCCAGTACTTTATACAGAGAAGAGCGCAATTATTCGCGAAGGAGATCCGGTGGATCAAATGCTATTCATTATGCGAGGAAAGCTTGCAACTATGACAACAAATGGTGGGAGAACAGGTTTTTTCAACTCTTTTGTTATCAAGGCAGGTGATTTCTGTGGAGAGGAGCTTTTAACGTGGGCCTTGGACCCCAACTCATCCTCAAATCTTCCCATTTCAACCAGAACTGTAGAATCTCTGTCAGAAGTTGAAGCCTTCGCTCTCATGGCTAATGACTTGAAGCATGTTGCTTCCCAATTTCGACGCCTTCACAACAAATACATCCAGCACACTTTCAGGTACTATTCCTTGCAATGGAGGACATGGGCTGCATGTTTCATACAAGCAGCTTGGCGTCGCCACTGTAAAAGGAAGATTGAGAAATCTTTACGTGAAGCGGAAGACAGGCTGCAAGATGCTTTGGCAAAAGAGGAAGGTTCTTCTGTAAGTTTTGGTGCCACTATATATGCAGCACGGTTTGCTGCCAATGCGTTACGCGGCCTAAGAAAAATTAAGGGGGAACGAAAGAACAACAGAATGTCTCAGAGGTTGCTTCCTCTGCTGCCTCAGAAGCCAACTGAACCTGATTTCACCACACAAGCTTAG 2157 0.4196 MDARSEKVVRFKDWSTESSFNAEKTISSDDGYPQRKVRTRPRDVFNNIRRGIQRRLEKIKNLRKPANVHPVSDATLKISASKTKILDPQGSFLQKWNKIFVIACVLAVSVDPLFFYIPVIDDSRKCLCWNEPLQIIASVLRTFFDLFYILHMAFKFRTGFIAPSSRVFGRGELIDDPKAIAKRYLSSYFIIDILSIIPLPQGCVLATRHSVTSEEKDWLKYAIFIQYVPRFLRIYPLFTEVTRTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSLESELRCWHRVLRNANLTTEISCQYPIDPRATTLISLNESCPFTDPDDIDDPKVFNFGIYIDALKSHVVESTMDFPQKIFFCFWWGLRNVSSLGQNLKTSTYVGEIIFACFIAIFGLVLFSLLIGNMQKYLQSVTVRVEEMRIKRRDAERWMSHRMLPEHLRERIRRYEHYKWQENRGVDEEKLICNLPKDLRRDIKRHLCLDLLKKVPMFETMDGQLLDALCDGLKPVLYTEKSAIIREGDPVDQMLFIMRGKLATMTTNGGRTGFFNSFVIKAGDFCGEELLTWALDPNSSSNLPISTRTVESLSEVEAFALMANDLKHVASQFRRLHNKYIQHTFRYYSLQWRTWAACFIQAAWRRHCKRKIEKSLREAEDRLQDALAKEEGSSVSFGATIYAARFAANALRGLRKIKGERKNNRMSQRLLPLLPQKPTEPDFTTQA 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00109 718 Coils Coil 640 660 - -
Accr6g00109 718 CDD CAP_ED 488 619 IPR000595 -
Accr6g00109 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 72 714 - -
Accr6g00109 718 FunFam Cyclic nucleotide-gated ion channel 1 486 604 - -
Accr6g00109 718 SUPERFAMILY cAMP-binding domain-like 417 614 IPR018490 -
Accr6g00109 718 Gene3D Jelly Rolls 486 606 IPR014710 -
Accr6g00109 718 Gene3D Helix hairpin bin 415 479 - -
Accr6g00109 718 SUPERFAMILY Voltage-gated potassium channels 87 410 - -
Accr6g00109 718 ProSiteProfiles cAMP/cGMP binding motif profile. 488 572 IPR000595 -
Accr6g00109 718 SMART cnmp_10 488 619 IPR000595 -
Accr6g00109 718 FunFam Cyclic nucleotide-gated ion channel 1 415 479 - -
Accr6g00109 718 Pfam Ion transport protein 96 416 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Accr6g00109 718 ProSiteProfiles IQ motif profile. 624 653 IPR000048 GO:0005515
Accr6g00109 718 MobiDBLite consensus disorder prediction 698 718 - -
Accr6g00109 718 Pfam Cyclic nucleotide-binding domain 509 601 IPR000595 -
Accr6g00109 718 Gene3D - 95 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00109 Accr-Chr6 1862982 1867268 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00109 1 716 Ion Channels AT5G53130 63.361 0.0 908
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00109 K05391 - qsa:O6P43_017768 1014.22