Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00082 ATGAAGGCAACCAAATTATATGAGCAGAGAACCATCACAAGCAAGCTTGTGAGAAATTTGTGCTTTTCCGGTGTCACACCAAGAGTCGTTCGGATTTCCGTCTCTGACAACTATGCTACTGATTCTTCCAGTGACGAAGAAGATGAGAGAGGAGGACGATTTTCTCGCCCGGTGAAGAAGTTCATCCATGAGATCAGAATCGAAGACTTGTCGAGTTTCAGAGCTAATAGCAGGGAAGTTAACGGGAATTGCAGGACCGTTTTGAAGAAGAAGAAGAAGAGGGAAAGGCCACCTGCAAGAATGGCCAGGAGGAAACAGAGCCTCCACGACGGGAAGAAGTTTCGGGGTGTCCGGCAGCGACTGTGGGGCCGGTGGGCGGCGGAGATCCGAGACCCAATTCTGGGAGCTCGGAAGTGGCTCGGCACGTTTGACACGGCGGAGGAAGCGGCACTTGTGTACGACATAGAAGCCATTCGTCTCAGAGGAGCTGATGCTCAGACAAATCTAATCAAACCGCCAGAGAAACACGAATCTATAAGGCTACCATCAAGCAATCACGAATCCCGAAGATCAGGGGAAAGTCCTCGGAAGATGAAGAGCGAGTGGTTGGAAAACGAGTGTGTCTACGATTCAGGCAGAGAGTCTCGCGATTTATTATGGTCTTCGTCTTCTTCTCCGACTTCTGTTCTTAGATACAGTGTGGGAGGGTCTTGTGAGCCTTCAGTGTGGGCAGGTATAGAAGAATCCAGAGAAGGAGAAAAGTTCTTGTTCCCAGATTCAGCATCATCAGAATTTGTATCCTGTTGTTATTCAGATTACGAAACCCCTCTTAGCCCTTCCTTGTTTTTTGAATCCGATGTGCCTCAACTGATTTCTGGCGAGATTTTGAGGGACATTCCATTTCAACTTGATGATGATTTTGAATCTTCCAAGTGGGTCGTTGATCATTACTTTCAGGCTGATTAA 966 0.4762 MKATKLYEQRTITSKLVRNLCFSGVTPRVVRISVSDNYATDSSSDEEDERGGRFSRPVKKFIHEIRIEDLSSFRANSREVNGNCRTVLKKKKKRERPPARMARRKQSLHDGKKFRGVRQRLWGRWAAEIRDPILGARKWLGTFDTAEEAALVYDIEAIRLRGADAQTNLIKPPEKHESIRLPSSNHESRRSGESPRKMKSEWLENECVYDSGRESRDLLWSSSSSPTSVLRYSVGGSCEPSVWAGIEESREGEKFLFPDSASSEFVSCCYSDYETPLSPSLFFESDVPQLISGEILRDIPFQLDDDFESSKWVVDHYFQAD 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00082 321 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Accr6g00082 321 MobiDBLite consensus disorder prediction 168 198 - -
Accr6g00082 321 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
Accr6g00082 321 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Accr6g00082 321 SUPERFAMILY DNA-binding domain 113 169 IPR016177 GO:0003677
Accr6g00082 321 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 238 - -
Accr6g00082 321 FunFam Ethylene-responsive transcription factor 2 112 171 - -
Accr6g00082 321 Gene3D AP2/ERF domain 112 170 IPR036955 GO:0003700|GO:0006355
Accr6g00082 321 MobiDBLite consensus disorder prediction 170 198 - -
Accr6g00082 321 CDD AP2 112 168 IPR001471 GO:0003700|GO:0006355
Accr6g00082 321 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Accr6g00082 321 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00082 Accr-Chr6 1403860 1404825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00082 1 240 AP2-EREBP Transcription Factor Family AT4G27950 39.592 4.78e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr6g00082 AP2 5.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00082 - - pcin:129289381 435.647