Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00057 ATGAACCTTACAATATATCCTGATCGCATTGTTCATGCAACTATTCCTGGCAATTCATTGACTCAAGCAGCCTATTCCAAAGGAGAGTTTAAAAAGTCCTCTGAAATTTTTTCCAAGAATCAATGGAGAACTTTGTCTTCTGAAAACAAAAGCCTCTCTAATACCAAACCCAATGCTTCTTTCTCTCCTAAATTTCCCATTTTCATTTGTTCCCATAACTCTCTTCCTTCTGCTTCAAACTTGTTAAACCATCACTTATATTCACCATCTTTGATTAACACTGATTTTCCATCTGATTGGGCTAATCAAATCAAAGTTGCTTGGAAGAATGCAGTAGAACAGATTGAAGAAGCCTCAGGCGAGTTTGGTCTTTGTGTTCGAAAGGTGTTCGACTCAAATCCATATCTGTACAACGTGGTTATTCCTGTAGGTGGTACATTAACAGCAGCTCTAATAGCATGGATTGTGATGCCTCGCATTTTGAGGAAGCTTCATGAATATTCAATGCAAAGTCCTGCTGCATTATTTCTTGAGGGAAGCATATCTGGTGAGCTGGTTCCTTATGAGAAAAGCATTTGGGGTTCTTTGGAAGATCCTGTGCGATATTTGGTTACCTTCATGGCATTCTCACAAAGTTGTGTAATGGTGGCTCCAACAACTTTAGCCTCACACCTTGCACAGGCTTGGAGGGGTGCGGTGATACTTTCATTTGTGTGGTTTTTGCATCAATGGAAAACAAATACTTTAAGGCACATTTTGTCTGGTCAAAGTTTACTTGGGCTTGGTCAAGATAAATTGGTTGCTCTAGACAAAGTTTCATCTGTTGGTCTGTTTGTGATTGGTATAATGGCTTTGGCTGAGGCTTGTGGTGTCGCTGTACAATCTATTGTAACTGTTGGTGGTATAGGAGGAGTTGCCACTGCTTTTTCAACCAAGGACATTCTTGGCAATGTATTTAGTGGCCTGTCTATGCCGTTTTCAGAGCCCTTTACAGTTGGAGATATAATCAAAGCTGGCTCAGTAGAGGGTGAAGTGGTGGAAATGGGACTTACAACTACATCATTGCTGAATTCTGAGAAGTTCCCTGTTGTGGTGCCAAACTCACTTTTTTCCAGCCAGGTGATAGTGAATAAGTCTCGTGCTGAATATTGCGCCATCACATCTAAAATTCCATTGGAGATTGGCGATTTGAGTAAAATTCCGAGGATATCTGATGATATAAAGAGCATGCTTAAAACAAAGGAAATGGTTTTCTTAGGGAAAGAGGCTCCTTACTGTTATCTGTCACGCGTTGAAAGTTCATTTGCACAATTGACTATTGGATACAACATCAAGTACATGAGCAAAGATGAGATGTATAGTGCAGAACAAGATATTCTGCTGGAAGTAGTTGACATTATTAAGAAGCATGGTGGTGAACTTGGCCATTCTAGGCGTCACATGTCGTATCACTCTGAGTAA 1461 0.4025 MNLTIYPDRIVHATIPGNSLTQAAYSKGEFKKSSEIFSKNQWRTLSSENKSLSNTKPNASFSPKFPIFICSHNSLPSASNLLNHHLYSPSLINTDFPSDWANQIKVAWKNAVEQIEEASGEFGLCVRKVFDSNPYLYNVVIPVGGTLTAALIAWIVMPRILRKLHEYSMQSPAALFLEGSISGELVPYEKSIWGSLEDPVRYLVTFMAFSQSCVMVAPTTLASHLAQAWRGAVILSFVWFLHQWKTNTLRHILSGQSLLGLGQDKLVALDKVSSVGLFVIGIMALAEACGVAVQSIVTVGGIGGVATAFSTKDILGNVFSGLSMPFSEPFTVGDIIKAGSVEGEVVEMGLTTTSLLNSEKFPVVVPNSLFSSQVIVNKSRAEYCAITSKIPLEIGDLSKIPRISDDIKSMLKTKEMVFLGKEAPYCYLSRVESSFAQLTIGYNIKYMSKDEMYSAEQDILLEVVDIIKKHGGELGHSRRHMSYHSE 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00057 486 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 227 311 IPR011014 GO:0016020
Accr6g00057 486 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 100 482 - -
Accr6g00057 486 Pfam Mechanosensitive ion channel 271 471 IPR006685 GO:0016020|GO:0055085
Accr6g00057 486 Gene3D - 329 377 IPR023408 -
Accr6g00057 486 SUPERFAMILY Sm-like ribonucleoproteins 313 378 IPR010920 -
Accr6g00057 486 Gene3D - 227 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00057 Accr-Chr6 910724 913200 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00057 100 475 Mechanosensitive Ion Channel Family AT4G00290 62.240 7.13e-169 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00057 K22047 - gmx:100814954 537.339