Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00056 ATGATGAACCTTACAATATATCCTGCTCGCATTATTCATGCAACCATTCCTGGCAATTCATTGACTCAAACAGCCTCTTCCAAAGGAGAGTCTATACAGTCCTCTGAAATTTTTTCCAAGAATCAATGGAGAACTTTGTCTTCTGAAAACAAAAACCTCTCTAATACCAAACCCGATGCTTCTTTCTCTCCTAAATTTCCCATTTTCATTTGTTCCCACCATAACTCTCTTCCTTCTGCTTCAAAGACCCACTTGTTCAACCATCAATCATATTCACCATCTTTGAATAACACTGATTTTCCATCTGATTGGGCTAATCAAATCAAAGATGCTTGGAAGAATGCAGTACAACAGATTGAAGAAGCCTCTGGCGAGTTTGGTCTCTGTGTTCGAAAGTTGTTCGACTCAAATCCATATCTGTACAACGTGGTTATTCCAGTAGGTGGTACATTAACAGCAGTTCTAATAGCATGGATTGTGATTCCTCGCATTTTGAGGAAGCTTCATAAATATTCAATGCAAAGTCCATCTGGGGAGCTAGTTCCTTATGAGAAAAGCTTTTGGGGTTCTTTGGAGGATCCTTTGCGATATTTTGTCACCTTCATGGCATTCTCACAAACTTGTGTAATGGTGGCTCCAACAACTTTAGCCTCACACCTTGCACAGGCTTGGAGGGGTGCGGTGATACTTTCATTTGTGTGGTTTTTGCATCAATGGAAAACAAATACTTTAAGGCACATTTTATCTGGTCAAAGTTTACTTGGGCTTGGTCAAGATATATTGGTTGCTCTAGACAAAGTTTCATCTGTTGGTCTGTTTGTGATTGGAATAATGGCTTTGGCCGAGGCTTGTGGTGTCGCTGTACAATCTCTTGTAACTGTTGGTGGTATAGGAGGAGTTGCCATAGCTTTTGCAACCAAGGACATTCTTGGCAATGTATTTAGTGGCCTGTCTATGCAGTTTTCAGACCCCTTTACAGTTGGAGATATAATCAAAGCTGGTTCAGTAGAAGGTGAAGTGGTGGAAATGGGACTTACAACTACATCATTGCTGAATTCTGAGAAGTACCCTGTTGTGGTGCCAAACTCACTTTTCCCCGGCCAGGTGATAGTGAATAAGTCTCGTGCTGAATATTGCGCCATCACATCTAAAATTTCATTGGAGATTGATGATTTGAGTAGAATTCCAAGGATATCTGATGATATAAACAGCATGCTTAAAACAAAGGAACTGGTTTTCTTAGGGAAAGAGGCTCCTTACTGTTATCTGTCACGCATTGAAAGTTCATTTGCACAATTGACTATTGGATACAACATCAAGTACATGAGCAAAGATGAGATGTATAGTGCAGAACAAGATATACTGCTGGAAGTAGTTGACATTATTAAGAAGCATGGTGGTGAACTCGGCCATTCTAAGCGTCACATGTCTTATCACTCCGAGTAA 1446 0.4032 MMNLTIYPARIIHATIPGNSLTQTASSKGESIQSSEIFSKNQWRTLSSENKNLSNTKPDASFSPKFPIFICSHHNSLPSASKTHLFNHQSYSPSLNNTDFPSDWANQIKDAWKNAVQQIEEASGEFGLCVRKLFDSNPYLYNVVIPVGGTLTAVLIAWIVIPRILRKLHKYSMQSPSGELVPYEKSFWGSLEDPLRYFVTFMAFSQTCVMVAPTTLASHLAQAWRGAVILSFVWFLHQWKTNTLRHILSGQSLLGLGQDILVALDKVSSVGLFVIGIMALAEACGVAVQSLVTVGGIGGVAIAFATKDILGNVFSGLSMQFSDPFTVGDIIKAGSVEGEVVEMGLTTTSLLNSEKYPVVVPNSLFPGQVIVNKSRAEYCAITSKISLEIDDLSRIPRISDDINSMLKTKELVFLGKEAPYCYLSRIESSFAQLTIGYNIKYMSKDEMYSAEQDILLEVVDIIKKHGGELGHSKRHMSYHSE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00056 481 Gene3D - 221 322 - -
Accr6g00056 481 Gene3D - 324 372 IPR023408 -
Accr6g00056 481 SUPERFAMILY Sm-like ribonucleoproteins 308 373 IPR010920 -
Accr6g00056 481 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 222 307 IPR011014 GO:0016020
Accr6g00056 481 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 104 477 - -
Accr6g00056 481 Pfam Mechanosensitive ion channel 266 466 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00056 Accr-Chr6 898465 901555 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00056 104 470 Mechanosensitive Ion Channel Family AT4G00290 60.052 1.22e-163 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00056 K22047 - gmx:100814954 518.85