Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00054 ATGTCTCCGGCCAGAGTGAGGTTTTCCTGTCTGAAACGTCTCCAGAAATTTTCAGCCAACTGTTGTTTAAACTTGAAGTCAACTCAACCAATAAAGCACCATATTTTGAACCTTACAAGGCGTAATGATTTTTTTCATGTAAAGCTTCCCATTAATTTACTGAGTCAATCTTATTTCAAAGGAGAGTTACAGTTACCTGCAATATTTGCCAAGAAGCAGTTCAGAACACAAACTTCAGAAAACAGCAACCTCTTGAATACCAAACCCACTGCATCATTATCTCCTAACATTTCCAGATTTTGCCTCCATCGAAAGTCTCTTCCTTTTGCTTCAATGACCCTAACGTTGAAACATCGATCATATTCATCATATCTGAGTGATTCCACAGATATCGGTGACTGGGCTGCTGATCTGACTCCATGTGTTCAACAGTTGCTTGACTCAAACCCATTCCTGGTCATCTCAGTTGGTTCCACTCTAATAGCTTGGATTGTGATGCCTCTGATTCTGAGGAAACTTCACCAATATTCAATGCAAAGTTCTGCAGCAACAACACTTCCTTATGAGAAAACCTTTTGGGTTGCTTTGGAGGATCCAGTGCGATATTTGGTTACCTTTGTGGCATTCTCACACATTTGTGTGACGATAGCTCCAACAAGTGAAGCCTCACAGCACCTTGCAGAGTCTTGGAAGGAGGCAGTGATCTTAGTATTTACATGGTTTTTGCATCGATGGAAAACAAACATCTTGGGACACATTTCTTCCCATCAAAGTTACCCTGGGCAAGATCAACATAAATTGCTTAATCTACAAAATGTCTCATCTGCTTCTGTATTTGGGATTGGTGGTACAATGGCTTTGACCCAGGCTGGTGCTGTCTCTGTTGAATCTGTTGTGATTTTTGGCGGAATGGGAGGAGCTGCCACTGCTTTTGCGGCCAGCGACGTGCTTGCCAATGTGTTCAGTGGACTGTGTATGCAGTTGTCGGAGCCTTTTACAATCGGCGATACAATTAAAGCAGGGTGGGTAGAAGGACAGGTGATAGAAATGGGAGTGACAAAAACATCATTGATGAATGGTGAGAAAATGGAAGTAATAGTGCCCAACTCACATTTTACCAAGCAGGCAATAGTGATAAAGAGTCGAGCAGAATGGCGGGGCACGATATCTAAAATCCGAGTGAGGATAGAGGCCATTGATAGAATTGGCAAGATATCACAAGAGATGAAGAGCATGCTCACAGCAAATGGTAATGTGTTGCTGGGAAAAAGAGCCCCTTACTGTTACTTGTCGCGCATTGGAAACTCACACGCAGAAGTGACTCTTGGCTACGACCTCAAACTCATGGGGAATGAAGCGATGTGTTCAGCAAAACAAGGTATCATGAAGGAGGCAATGGAGATTCTCCGCAGGCATAATGCTGCTCATCTCTCCTCGGATTCTGACTCCGACTCCGACTCTGATTGA 1467 0.4335 MSPARVRFSCLKRLQKFSANCCLNLKSTQPIKHHILNLTRRNDFFHVKLPINLLSQSYFKGELQLPAIFAKKQFRTQTSENSNLLNTKPTASLSPNISRFCLHRKSLPFASMTLTLKHRSYSSYLSDSTDIGDWAADLTPCVQQLLDSNPFLVISVGSTLIAWIVMPLILRKLHQYSMQSSAATTLPYEKTFWVALEDPVRYLVTFVAFSHICVTIAPTSEASQHLAESWKEAVILVFTWFLHRWKTNILGHISSHQSYPGQDQHKLLNLQNVSSASVFGIGGTMALTQAGAVSVESVVIFGGMGGAATAFAASDVLANVFSGLCMQLSEPFTIGDTIKAGWVEGQVIEMGVTKTSLMNGEKMEVIVPNSHFTKQAIVIKSRAEWRGTISKIRVRIEAIDRIGKISQEMKSMLTANGNVLLGKRAPYCYLSRIGNSHAEVTLGYDLKLMGNEAMCSAKQGIMKEAMEILRRHNAAHLSSDSDSDSDSD 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00054 488 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 144 481 - -
Accr6g00054 488 Gene3D - 331 378 IPR023408 -
Accr6g00054 488 Pfam Mechanosensitive ion channel 274 474 IPR006685 GO:0016020|GO:0055085
Accr6g00054 488 SUPERFAMILY Sm-like ribonucleoproteins 315 377 IPR010920 -
Accr6g00054 488 Gene3D - 231 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00054 Accr-Chr6 866146 868446 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00054 133 475 Mechanosensitive Ion Channel Family AT4G00290 51.117 1.58e-124 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00054 K22047 - gmx:100789047 394.43