Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00053 ATGATTTCTGGAAACAGCAACCTCTTAACCAGACCCGGGGCTTCGTTTTCTCCCAATGTTTCTAGTTTTTTCTTCCATAAAGCTTTCCCTTTTGCTTCGCCTTCAATGACCCTCTTGTTGAATCATCGACCATATTCATCATCTCTGGGTGGCAATGGAAGTAGAGATGGGAGCAATGATTTTCCACCTAATTCTGGGGCAAGTGACACGAATGCCAGCATTGATTCTATTGGTACAAGTGATTGGACTGATAAAATCAAAGATGCTTGGCAGAGTGCAGTAGAGACAGTAACATATTCTGCACAAAAGGTTAAAGAAGCCTCTGATGAGCTGACTCCACATGCTCAACAGTTGCTCGACTCACATCCATTCCTTAAAGATGTGATTATTCCAGTTGGTGGTACTTTTACTGCCACACTAATAGCCTGGATTGTGATGCCTTGGATCTTAAGAAAATTTCACAAATATGTAATGCAACGTCCTGCTGCAATATTTCCAGGAAGCACATCTGAGAAGCAAGTTCCTTATGAGAAAAGTATTTGGGGTTCTTTGGAAGATCCAGTGCGATATTTGGTTACCTTCATGGCATTCTCACAGATTGGTCTACTGGTAGCTCCAACAACTGTGGCCTCACAATACCTTACTCAGGCTTGGAGGGGTGCAGTGATCCTTTCATTTGTGTGGTTTTTGCATCGATGGAAAACAAATGTCTGGTCACGCATTTTGTCTGGTCAAAATTTACTCGGGTTTGATCGAGATAAATTGATCGCTCTAGACAAAATATCATCTGTGGGTCTATTTGTGATTGGTATAATGGCTTTAGCTGAGGCTTGTGGAGTGGCTGTGCAATCTATTATAACTGTTGGTGGGATAGGAGGAGTTGCCACTGCTTTTGCTGCTAGAGACATACTTGGAAATGTATTCAGTGGGTTGTCTGTGCAATTTTCAAAGCCCTTTACAGTTGGAGATACAATAAAAGCTGGCTCGGTAGAAGGTCAGGTGGTGGAAATGGGACTTACTACTACATCATTGCTGAATGCTGAGAAGTTCCCAGTTATAGTGCCGAACTCACTTTTCTCTAGCCAGGTAATAGTGAACAAGTCTCGTGCTGAATGCCGTGCCATCGTGTCTAAAATTCCTTTGCGAATTGAGGACATAAGTAAAATACCCAAGATATCAGATAAAATCAAGACAATGCTAAGAACAGATCCTGTGGTTTTCTTAGGGAAAGGGGTTCCTTACTGTTACATGTCGCGAATCGAAAGTTCATATGCAGAACTGACTATTGGATACAACCTCAAGTACATGCGTAAAGATGAGATGTACTCTGCAGAACAAGATATTCTGCTACAGGCGGCCCAGATTATTAAGGCGCATGGTGCTGAACTTGGCAATACCTGGCAAAACATGCCCTAA 1416 0.4237 MISGNSNLLTRPGASFSPNVSSFFFHKAFPFASPSMTLLLNHRPYSSSLGGNGSRDGSNDFPPNSGASDTNASIDSIGTSDWTDKIKDAWQSAVETVTYSAQKVKEASDELTPHAQQLLDSHPFLKDVIIPVGGTFTATLIAWIVMPWILRKFHKYVMQRPAAIFPGSTSEKQVPYEKSIWGSLEDPVRYLVTFMAFSQIGLLVAPTTVASQYLTQAWRGAVILSFVWFLHRWKTNVWSRILSGQNLLGFDRDKLIALDKISSVGLFVIGIMALAEACGVAVQSIITVGGIGGVATAFAARDILGNVFSGLSVQFSKPFTVGDTIKAGSVEGQVVEMGLTTTSLLNAEKFPVIVPNSLFSSQVIVNKSRAECRAIVSKIPLRIEDISKIPKISDKIKTMLRTDPVVFLGKGVPYCYMSRIESSYAELTIGYNLKYMRKDEMYSAEQDILLQAAQIIKAHGAELGNTWQNMP 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00053 471 SUPERFAMILY Sm-like ribonucleoproteins 302 367 IPR010920 -
Accr6g00053 471 Gene3D - 213 317 - -
Accr6g00053 471 Pfam Mechanosensitive ion channel 260 462 IPR006685 GO:0016020|GO:0055085
Accr6g00053 471 MobiDBLite consensus disorder prediction 49 74 - -
Accr6g00053 471 Gene3D - 318 366 IPR023408 -
Accr6g00053 471 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 82 466 - -
Accr6g00053 471 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 214 301 IPR011014 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00053 Accr-Chr6 860928 864127 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00053 7 469 Mechanosensitive Ion Channel Family AT4G00290 59.615 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00053 K22047 - gmx:100789047 651.744