Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00052 ATGAACCTTACAAGATCTGTGGATTGCGTTCATTTAAGATTTCTGAGTACTACATTCGGTCGAGCTTATTCCAAACGAGAGTTACAGTTACCTGAAATTTTTGCCAAGAACCAGTTTAGAACGATGATTTCTGGAAACAGCAACCTCTTAACCAGACCCGGGGCTTCGTTTTCTCCCAATGTTTCTAGTTTTTTCTTCCATAAAGCTTTCCCTTTTGCTTCGCCTTCAATGACCCTCTTGTTGAATCATCGACCATATTCATCATCTCTGGGTGGCAATGGAAGTAGAGATGGGAGCAATGATTTTCCACCTAATTCTGGGGCAAGTGACACGAATGCCAGCATTGATTCTATTGGTACAAGTGATTGGACTGATAAAATCAAAGATGCTTGGCAGAGTGCAGTAGAGACAGTAACATATTCTGCACAAAAGGTTAAAGAAGCCTCTGATGAGCTGACTCCACATGCTCAACAGTTGCTCGACTCACATCCATTCCTTAAAGATGTGATTATTCCAGTTGGTGGTACTTTTACTGCCACACTAATAGCCTGGATTGTGATGCCTTGGATCTTAAGAAAATTTCACAAATATGTAATGCAACGTCCTGCTGCAATATTTCCAGGAAGCACATCTGAGAAGCAAGTTCCTTATGAGAAAAGTATTTGGGGTTCTTTGGAAGATCCAGTGCGATATTTGGTTACCTTCATGGCATTCTCACAGATTGGTCTACTGGTAGCTCCAACAACTGTGGCCTCACAATACCTTACTCAGGCTTGGAGGGGTGCAGTGATCCTTTCATTTGTGTGGTTTTTGCATCGATGGAAAACAAATGTCTGGTCACGCATTTTGTCTGGTCAAAATTTACTCGGGTTTGATCGAGATAAATTGATCGCTCTAGACAAAATATCATCTGTGGGTCTATTTGTGATTGGTATAATGGCTTTAGCTGAGGCTTGTGGAGTGGCTGTGCAATCTATTATAACTGTTGGTGGGATAGGAGGAGTTGCCACTGCTTTTGCTGCTAGAGACATACTTGGAAATGTATTCAGTGGGTTGTCTGTGCAATTTTCAAAGCCCTTTACAGTTGGAGATACAATAAAAGCTGGCTCGGTAGAAGGTCAGGTGGTGGAAATGGGACTTACTACTACATCATTGCTGAATGCTGAGAAGTTCCCAGTTATAGTGCCGAACTCACTTTTCTCTAGCCAGGTAATAGTGAACAAGTCTCGTGCTGAATGCCGTGCCATCGTGTCTAAAATTCCTTTGCGAATTGAGGACATAAGTAAAATACCCAAGATATCAGATAAAATCAAGACAATGCTAAGAACAGATCCTGTGGTTTTCTTAGGGAAAGGGGTTCCTTACTGTTACATGTCGCGAATCGAAAGTTCATATGCAGAACTGACTATTGGATACAACCTCAAGTACATGCGTAAAGATGAGATGTACTCTGCAGAACAAGATATTCTGCTACAGGCGGCCCAGATTATTAAGGCGCATGGTGCTGAACTTGGCAATACCTGGCAAAACATGCCCTAA 1539 0.4204 MNLTRSVDCVHLRFLSTTFGRAYSKRELQLPEIFAKNQFRTMISGNSNLLTRPGASFSPNVSSFFFHKAFPFASPSMTLLLNHRPYSSSLGGNGSRDGSNDFPPNSGASDTNASIDSIGTSDWTDKIKDAWQSAVETVTYSAQKVKEASDELTPHAQQLLDSHPFLKDVIIPVGGTFTATLIAWIVMPWILRKFHKYVMQRPAAIFPGSTSEKQVPYEKSIWGSLEDPVRYLVTFMAFSQIGLLVAPTTVASQYLTQAWRGAVILSFVWFLHRWKTNVWSRILSGQNLLGFDRDKLIALDKISSVGLFVIGIMALAEACGVAVQSIITVGGIGGVATAFAARDILGNVFSGLSVQFSKPFTVGDTIKAGSVEGQVVEMGLTTTSLLNAEKFPVIVPNSLFSSQVIVNKSRAECRAIVSKIPLRIEDISKIPKISDKIKTMLRTDPVVFLGKGVPYCYMSRIESSYAELTIGYNLKYMRKDEMYSAEQDILLQAAQIIKAHGAELGNTWQNMP 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00052 512 Gene3D - 254 358 - -
Accr6g00052 512 Gene3D - 359 407 IPR023408 -
Accr6g00052 512 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 255 342 IPR011014 GO:0016020
Accr6g00052 512 SUPERFAMILY Sm-like ribonucleoproteins 343 408 IPR010920 -
Accr6g00052 512 MobiDBLite consensus disorder prediction 90 115 - -
Accr6g00052 512 Pfam Mechanosensitive ion channel 301 503 IPR006685 GO:0016020|GO:0055085
Accr6g00052 512 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 123 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00052 Accr-Chr6 860928 864250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00052 48 510 Mechanosensitive Ion Channel Family AT4G00290 59.615 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00052 K22047 - gmx:100814954 667.537