Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00048 ATGGGAGGTTGCTGCTGTTCTGCCAGAAAACCTCATCTGCATGGTACAGCAGTGTATTATTATTGCCCACCAGCTTTGGAAGAGCGGGAGTCATTAACCTCAAATGACGGTACAGCAGCTTCACTTGGTGCTGGATTGCTAGCAAGTTCGAACTTGGAAACGTCCACACCAGATACATACCAGCCCCCTCCTGCACCTTTGCCATATGATGTGGTCTTTGGTCCAATATCAACAGATTCTGAATCTGGAAGGAAAACCGTTAGTGGTAGTAGTTTTGAAACATTGATTACATCTGAAGATCTTGAAGAATTGGATTGCAAAGCTCAAGCAAATTCTGATCTTTTGTCTCCAAAGAAGAAAGAACTATCAAAAGCAAATGAATGTCATTTATTAATGACAGAAGAAGAAGAAGCCTGCCCAATTTGTCTTGAAGAATATGAGGTTGAGAATCCTAAAACTCTGACAAAGTGTGAACACCATTTTCACCTATCTTGCATTCTTGAGTGGATGGAAAGAAGTGACACCTGTCCTATATGTGACCAGGAGATGATATTTGAGTAG 561 0.4135 MGGCCCSARKPHLHGTAVYYYCPPALEERESLTSNDGTAASLGAGLLASSNLETSTPDTYQPPPAPLPYDVVFGPISTDSESGRKTVSGSSFETLITSEDLEELDCKAQANSDLLSPKKKELSKANECHLLMTEEEEACPICLEEYEVENPKTLTKCEHHFHLSCILEWMERSDTCPICDQEMIFE 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00048 186 SMART ring_2 139 179 IPR001841 -
Accr6g00048 186 FunFam Putative E3 ubiquitin-protein ligase RHB1A 115 184 - -
Accr6g00048 186 Pfam Ring finger domain 138 179 IPR001841 -
Accr6g00048 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 186 IPR013083 -
Accr6g00048 186 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 38 185 - -
Accr6g00048 186 SUPERFAMILY RING/U-box 132 184 - -
Accr6g00048 186 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00048 Accr-Chr6 822507 824612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00048 1 186 C3H Transcription Factor Family AT4G00335 57.219 6.95e-72 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00048 - - gmx:100792561 306.99