Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00043 ATGCAGTTGCCTCAACAATCTCGGAAATTCAATGAATTAACCCAACATGGTCCCAACCAAGAGGCTCAACTCAAGGCTCAAAGCATTGAGCAGCAAATGCTAAATCCTGCTCATCAAGTATACCTTCAATATGCACTCCAGGCTGCCCAACAAAAGTCTGCTTTGGCAATCCAGTCTCAGCAGCAAAGTAAAATTGGAATGTTAGGGTCTTCATCTGTGAAGGATCAAGAAATGCGTATGGGAAATTTGAAAATGCAGGACCTTATGTCTATGCAGGCAGTAAATGAAGCTCAAGGATCTACCTCCAGGAATGCACCCGAACAATTTTCTCGTGGGGAAAAGAAGATAGAACAAGGAAAAAGTGAGGGAAAGCCTTCAACCCAGGGACCAGCCACAACACAATTAATGCCTGGACATATGATAAGACCTGTACAAGCACCCAATTCTCGGCAGGGCATCCAAAATGTCATGAGCAATCAGATTGCAGTGTCTTCTCAATTGCAGGCTGTGCAGGCATGGGCACGTGATCGTAATATTGATCTATCACATCCCGCAAATGCTAACTTAGTTGCTCAACTCTTTCCTATGATGCAGTCAAGGATGGTTTCCCAACAAAAAGCAAATGAGAGTGGCATTGGTGCACAGTCATCACTAGTAGCTGTTTCAAAGCAGCAGGTTACATCTCCAGCAGGTGCAAGCGAAAGCTCAGCACATGCTAACTCATCAAGTGATGCGTCTGGGCTGTCCGGTCCTTCAAAAGCCAGGCAGATTCCTGCCAACCATTTTGGTCCACCAACAAATGCTGTTACAGCTAGTCAGTCCAGTGACACGGCTGTGCAGCAATTTAATAATCATGGCAGAGAGTCTCAAGTATCCATGAGGCAACCTGTTTTAGTTGGAAATGCAATGCCTTCCGCACAACCCCAACAATCGTCTACCAACATGAAATTGGGTTCAGATCATCATTTGAATGCAAAAGGTGCTTTATCTGGTCCAGAACCTCCGCAAATGCAGCATTTAAGGAAGTTAAACCAATTATCTTCTCAGGCATCAGGCACTACAAATGAAGGGAGCTCAGGAAATTATGTGAAATCCCAAGGGGCACCATCTCAGACGCTTCAACAACGACATGGATTTACCAAACAACAGCTGCATGTTCTTAAAGCACAGATACTGGCATTTAGGCGGCTCAAGAAAGGAGAGGGTACCCTTCCCCAAGAACTTCTTCGGTCTATTATTCCACCACCTCTTGAGTCAATCCATCCTTTAGGAGGACAAAATTATGATAAGTCTGCTGGAGACATCATGCCAGAACACTCAAGGCACATAGAATCTGAAGCAAAGGACTTGCAACATGTTCCAGCAGTTAATGGACAGGTTTCTTCAAAACAGGAAACTTTTTCCAGAGATGAGAAATCCACTGTGTCAGCAGTTCAAATGCAGTCTAAGCCTGTTGCAATAAAGGATCATGCTCCTTCTCCGATGCTATCTTCTCAAAAGGAAGAGCAACAACCATTTGGTTGCCCTGTTAAGTTAGATCAGGAAAGTGAACGTGAAACTAACAGAAATCCTGTTCGGAATGAGTTGCCGTTAGACAGGGGGAAGGCTATTGCACCACAGCCTTCTGCATCTGAGTCAATGCAAAATAAGAACCCGATACAAACAAGCATGGTTGGGCAGCCAAAAGATGGAGGATCTACAAGAAAATATTATGGACCCCTGTTTGATTTTCCCTTCTTTACTAGGAAACATGACTCCTTTGGCTCGTCAATGATGGTAGGCAACAACAACAATTTGTTGCTGGCATATGATGTCAAAGATCTTCTTGCTGAGGAAGGCACGAAAGTACTTGACAAGAAAAGGAGAGAGAATTTAAAGAAGATTGAAGTTCTGCTAGCACATAACTCAGGGAGGAAATTAATTAGGCCTGATCTTGTGTTGAGGTTACAAATTGAAGAGAAAAAACTTTGTCTTAGAGGTCTTCAGGCACGTTTAAGGGATGAGATTGATCAACAGCAACAAGAGGTAATGGCAATGCCAGACAGGCAATATCGTAAGTTTGTTAGATTGTGCGAGCGTCAGCGTATAGAACTTGCTAGGCAAGTGCAGGCATCACAGAGAGCTACAAGGGAGAAGCAACTCAAATCTATATTTCAGTGGCGTAAGAAGCTTCTTGAGGCACACTGGGCCATTCGTGATGCTCGAACTGCTCGGAATAGGGGGGTGGCCAAATATCATGAGAAAATGTTGAGGGAGTTTTCAAAACGTAAAGATGATGACAGGAACAAAAGGATGGAAGCCTTGAAAAATAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATGCCAGGTGATGCTGCTGAGAGATACTCTGTTGTTTCAACTTTCTTAACACAGACAGAAGAGTATCTTCATAAACTGGGAAGTAAGATAACAGCTGCCAAGAATCAACAGGAAGTAGAGGAGGCATCAAAAGCTGCTGCAGCTGCTGCACGGTTGCAGGGCCTTTCTGAAGAAGAAGTCAGATCAGCGGCAGCTTGTGCTGGAGAAGAAGTGATGATTAGAAATCGTTTTTTGGAAATGAATGCTCCTAAAGATGGTTCATCTGTCAGCAAGTATTACAACCTTGCTCATGCTGTGAATGAGAAGGTCGTAAGGCAACCATCAATGTTGCGGGCTGGAACATTGAGAGATTATCAGCTTGTTGGCTTGCAATGGATGCTTTCTTTGTATAACAACAAGTTAAATGGAATCTTGGCGGATGAGATGGGTCTTGGCAAAACTGTGCAGGTCATGGCATTGATTGCCTATTTGATGGAATTCAAAGGAAATTATGGTCCACATCTCATAATAGTACCGAATGCTGTTTTGGTTAACTGGAAGAGTGAGTTTTATAACTGGTTACCATCTGTGTCATGCATTTTTTATGTTGGAGCGAAGGATCAACGATCTAAATTATTTTCTCAAGAGGTTTGTGCATTGAAATTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTACGACCGGACAAAGCTTTCAAAAATTGACTGGAAGTATATCATAATTGATGAAGCACAGAGGATGAAAGATAGGGAGTCAGTTCTAGCACGTGATCTTGATCGATATCGTTGTCAGAGACGCCTACTTTTGACTGGAACCCCCTTACAGAATGATTTGAAGGAACTTTGGTCACTTTTAAACCTACTCCTGCCAGAAGTTTTTGACAATCGGAAAGCATTTCATGATTGGTTCTCGAAACCTTTTCAAAAGGAAGGCCTTAGTCAAAATGTGGAGGATGATTGGCTTGAGACAGAAAAGAAAGTTATAATTATCCACCGACTTCATCAGATTCTTGAGCCATTCATGCTCAGGCGTCGTGTTGAAGATGTAGAAGGAATGCTGCCACCAAAGGTCTCTACAGTTTTGCGATGTAGAATGTCAGCTATCCAGAGTGCTATTTATGACTGGGTCAAATCCACTGGTACCCTTCGTCTTGATCCTGAGGATGAGAAATGTAAGGTTCAAAAGAATCCAGCCTACCAGGCAAAGCAATATAAAACGTTAAATAACAGATGCATGGAGCTGCGTAAAACTTGCAATCACCCATTGCTCAACTACCCATTCTTCAATGACTTATCCAAAGAGTTTCTTGTGAAATCTTGTGGGAAACTCTGGATCTTGGATCGAATCCTTATAAAACTTCAAAGGACCGGACACCGAGTTCTGCTCTTTAGCACTATGACAAAACTCTTGGACATTTTGGAAGAATACCTACAATGGCGACGGCTTGTGTACAGAAGAATTGATGGGACAACAAGTTTAGAAGATCGTGAATCAGCTATAGTGGATTTCAATAGTGCTGATTCAGACTGTTTCATCTTCCTGCTTAGTATTAGAGCTGCTGGGCGAGGCCTTAACCTTCAGTCTGCTGACACAGTAGTTATATATGATCCTGACCCAAATCCTAAAAATGAGGAGCAGGCAGTTGCTAGAGCTCATCGCATTGGTCAGAAAAGAGAAGTCAAAGTTATCTACTTGGAAGCTGTTGTAGACAAAATCTCCAGCTATCAAAAAGAGGATGAACTGAGAAGTGGAGGCACTGTTGATATGGAGGAAGAACTTGTAGGTAAGGATCGTTATATTGGATCCATTGAAAGCCTAATAAGGAACAATATTCAACAGTATAAGATTGATATGGCTGATGAGGTCATTAATGCTGGACGTTTTGACCAAAGAACAACACATGAAGAGAGACGCTTGACTTTGGAGACATTATTACATGATGAAGAAAGGTATCAAGGGACTGTCCATGATGTTCCCTCACTACAGGAGGTAAATCGCTTGATTGCTAGGAGTGAGGAGGAAGTTGAATTGTTTGATCAAATGGATGAGGAATTGGATTGGATTGAAGAGATGACAAAGTATGATCAGGTGCCGAAGTGGCTTCGAGTTAGTACAAGAGAAGTAAATGCCACTATTGCTGCTTTATCGAGAAGACCATCAAAGAACACTCTATTGGGAGGTGGTGATGGTGTGGAATCTGGTGAAATGGGATCTGAAAGGAGAAGGGGACGACCCAAGGGAAAGAAGGATCTTAATTATAAAGAGTTAGATGATGAAAATGAAGGATTCTCTGAAGCAAGTTCTGATGAAAGAAATGAATATTCAGCCCGTGAAGATGAAGGGGAAATTGGGGAATTTGAAGATGATGGGCTGAGCATGGCAGATGGAGCTCAACCCAATCATAAGGATCAATTGGAAGAAGATAGTCCAATTTGTGATGCTGGATATGAATTCCCTCAGTCTGCAGAAAATGCTAGAAACAATCTTACGGCTGAAGGATCTGGATCCCCAGGAACATCCTCAGACAGTCAAAGGATGACACAGACTGTATCTCCTTCAATTTCCTCCCAGAAATTTTGTTCCCTCTCTGCATTGGATGCCAGGCCAAGTTCCCTTTCAAAAAGGATTACTGATGAGTTAGAGGAGGGAGAAATTGCCATATCTGGTGATTCTCACATGGATAATCAACAATCTGGGAGTTGGATTCATGATCGTGATGAAGGTGAAGACGAACAAGTTTTGCAACCTAAGATTAAGCGCAAACGTAGTCTTCGTGTTCGACCTCGTCATGCCCTGGAGAGGCCTGAGGAGAAGTCCGGTGGTGAGGCGGGATCTCTTCACCGAGGAGAATCATCTCTTTTGTCTGTTCATACAGACCATAGATATCAAGCACAAGTAAGGACTGATCATGAAGAAAAGTCATTTGGAGGATCCAGTGCCAGCAGGCATGATCAGAACGAGTCATCCTTGAAAGTAAAGAGAAATTTACCTTCAAGGAGAGTAGCTAATACCTCCAAATTTCAGGGCTCTCCTAAGTCTAGTCGAATGAACTGCATTTCTACTTCTGAGGATGGTGGACACTCAAGAGAAAGTTGGGAGGGGAAGCCTATCAACTCCAGTGGATCTTTGGCTTCATCCTCTAAAATGTCTGAAATCATCCAAAGAAGGTGCAAGAATGTAATTAGCAAGCTCCAAAGGAGAATAGACAAGGAAGGTCATCAAATCGTACCCTTGCTAAAAGATTTATGGAAACGGATTGAAAATTCAGGGTACACCGGTGGATCTGGGAGTAGTCTATTGGACTTGCAGAAGATTGACCAGCGAATTGATCGATTGGAATATAGTGGAGTGATGGAGCTTGTTTTTGATGTGCAGTTCATGCTGAAGAGTGCAATGCATTTTTACGGGTTTTCACACGAGGTAAGATCTGAAGCAAGAAAGGTTCACGATCTCTTTTTTGATATCTTGAAAATTGCTTTTCCTGATACGGATTTTCGAGAAGCAAGAAATGCACTTCCCTTCTCGGGTCAAATTTCAGCCAGTGCCGTAACATCTCCCAGACAAATGGCTGGCAGCCAAACCAAGAGGCACAGGACAATAAATGAGGTTGGAACTGATGCAAGCCCTTCACAGAAGCACCTGCAACGTGGATCTGCTTCAAGTGGGGATAACACCAGGATCAAAGTTCATATTCCACCGAAGGAATCAAAATGTGGAAATGGAGGTGGCAACAGCCGAGAACTTCCCCAGGATGATTCTCCACTGCTTACTCATCCAGGTGAACTGGTTGTATGCAAGAAGAAAAGAAATGACAGAGACAAATCCTTGGCGAAATCTAGGGCTGGGTCAGCTGGCCCGGTCTCACCACCCAATGTGGTCCCTGCTGCAAGAAGTCCAGGGCTTGGTTCAGTCCCAAGGGATGCTAGACTAGCGATTGGCCAGCCATCTCAGCATCCGAATGGAACTGGTGGGTCAGATAGCTGGGCAAGACCAGTGAAGCGATTAAGGTCAGATTCTGTGAAGAGAAGGCCAAGTCATCAGTAG 6405 0.4328 MQLPQQSRKFNELTQHGPNQEAQLKAQSIEQQMLNPAHQVYLQYALQAAQQKSALAIQSQQQSKIGMLGSSSVKDQEMRMGNLKMQDLMSMQAVNEAQGSTSRNAPEQFSRGEKKIEQGKSEGKPSTQGPATTQLMPGHMIRPVQAPNSRQGIQNVMSNQIAVSSQLQAVQAWARDRNIDLSHPANANLVAQLFPMMQSRMVSQQKANESGIGAQSSLVAVSKQQVTSPAGASESSAHANSSSDASGLSGPSKARQIPANHFGPPTNAVTASQSSDTAVQQFNNHGRESQVSMRQPVLVGNAMPSAQPQQSSTNMKLGSDHHLNAKGALSGPEPPQMQHLRKLNQLSSQASGTTNEGSSGNYVKSQGAPSQTLQQRHGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRSIIPPPLESIHPLGGQNYDKSAGDIMPEHSRHIESEAKDLQHVPAVNGQVSSKQETFSRDEKSTVSAVQMQSKPVAIKDHAPSPMLSSQKEEQQPFGCPVKLDQESERETNRNPVRNELPLDRGKAIAPQPSASESMQNKNPIQTSMVGQPKDGGSTRKYYGPLFDFPFFTRKHDSFGSSMMVGNNNNLLLAYDVKDLLAEEGTKVLDKKRRENLKKIEVLLAHNSGRKLIRPDLVLRLQIEEKKLCLRGLQARLRDEIDQQQQEVMAMPDRQYRKFVRLCERQRIELARQVQASQRATREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHEKMLREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSMPGDAAERYSVVSTFLTQTEEYLHKLGSKITAAKNQQEVEEASKAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPKDGSSVSKYYNLAHAVNEKVVRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEFYNWLPSVSCIFYVGAKDQRSKLFSQEVCALKFNVLVTTYEFIMYDRTKLSKIDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEGLSQNVEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGMLPPKVSTVLRCRMSAIQSAIYDWVKSTGTLRLDPEDEKCKVQKNPAYQAKQYKTLNNRCMELRKTCNHPLLNYPFFNDLSKEFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSADSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYLEAVVDKISSYQKEDELRSGGTVDMEEELVGKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQGTVHDVPSLQEVNRLIARSEEEVELFDQMDEELDWIEEMTKYDQVPKWLRVSTREVNATIAALSRRPSKNTLLGGGDGVESGEMGSERRRGRPKGKKDLNYKELDDENEGFSEASSDERNEYSAREDEGEIGEFEDDGLSMADGAQPNHKDQLEEDSPICDAGYEFPQSAENARNNLTAEGSGSPGTSSDSQRMTQTVSPSISSQKFCSLSALDARPSSLSKRITDELEEGEIAISGDSHMDNQQSGSWIHDRDEGEDEQVLQPKIKRKRSLRVRPRHALERPEEKSGGEAGSLHRGESSLLSVHTDHRYQAQVRTDHEEKSFGGSSASRHDQNESSLKVKRNLPSRRVANTSKFQGSPKSSRMNCISTSEDGGHSRESWEGKPINSSGSLASSSKMSEIIQRRCKNVISKLQRRIDKEGHQIVPLLKDLWKRIENSGYTGGSGSSLLDLQKIDQRIDRLEYSGVMELVFDVQFMLKSAMHFYGFSHEVRSEARKVHDLFFDILKIAFPDTDFREARNALPFSGQISASAVTSPRQMAGSQTKRHRTINEVGTDASPSQKHLQRGSASSGDNTRIKVHIPPKESKCGNGGGNSRELPQDDSPLLTHPGELVVCKKKRNDRDKSLAKSRAGSAGPVSPPNVVPAARSPGLGSVPRDARLAIGQPSQHPNGTGGSDSWARPVKRLRSDSVKRRPSHQ 2134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00043 2134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 884 1131 IPR027417 -
Accr6g00043 2134 PANTHER SNF2/RAD54 HELICASE FAMILY 607 1661 - -
Accr6g00043 2134 SMART helicmild6 1258 1342 IPR001650 -
Accr6g00043 2134 CDD SF2_C_SNF 1227 1352 - -
Accr6g00043 2134 MobiDBLite consensus disorder prediction 1686 1705 - -
Accr6g00043 2134 Gene3D - 1835 1975 IPR036427 GO:0005515
Accr6g00043 2134 MobiDBLite consensus disorder prediction 303 319 - -
Accr6g00043 2134 MobiDBLite consensus disorder prediction 1785 1812 - -
Accr6g00043 2134 Coils Coil 1448 1468 - -
Accr6g00043 2134 Gene3D - 1141 1352 IPR027417 -
Accr6g00043 2134 SMART ultradead3 897 1086 IPR014001 -
Accr6g00043 2134 FunFam ATP-dependent helicase BRM 702 776 - -
Accr6g00043 2134 MobiDBLite consensus disorder prediction 348 379 - -
Accr6g00043 2134 Gene3D - 703 776 - -
Accr6g00043 2134 MobiDBLite consensus disorder prediction 1969 2134 - -
Accr6g00043 2134 Pfam Helicase conserved C-terminal domain 1231 1342 IPR001650 -
Accr6g00043 2134 MobiDBLite consensus disorder prediction 1969 2012 - -
Accr6g00043 2134 MobiDBLite consensus disorder prediction 1755 1832 - -
Accr6g00043 2134 MobiDBLite consensus disorder prediction 225 291 - -
Accr6g00043 2134 SMART bromo_6 1833 1948 IPR001487 GO:0005515
Accr6g00043 2134 MobiDBLite consensus disorder prediction 96 135 - -
Accr6g00043 2134 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1232 1409 IPR001650 -
Accr6g00043 2134 Pfam SNF2-related domain 904 1208 IPR000330 GO:0005524|GO:0140658
Accr6g00043 2134 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 913 1078 IPR014001 -
Accr6g00043 2134 SUPERFAMILY Bromodomain 1887 1946 IPR036427 GO:0005515
Accr6g00043 2134 MobiDBLite consensus disorder prediction 1608 1657 - -
Accr6g00043 2134 FunFam ATP-dependent helicase BRM 1141 1351 - -
Accr6g00043 2134 MobiDBLite consensus disorder prediction 541 562 - -
Accr6g00043 2134 MobiDBLite consensus disorder prediction 1716 1731 - -
Accr6g00043 2134 MobiDBLite consensus disorder prediction 459 564 - -
Accr6g00043 2134 ProSiteProfiles QLQ domain profile. 378 414 IPR014978 GO:0005524|GO:0005634|GO:0006355
Accr6g00043 2134 MobiDBLite consensus disorder prediction 303 336 - -
Accr6g00043 2134 MobiDBLite consensus disorder prediction 512 529 - -
Accr6g00043 2134 MobiDBLite consensus disorder prediction 1521 1566 - -
Accr6g00043 2134 FunFam Brahma1 1835 1958 - -
Accr6g00043 2134 MobiDBLite consensus disorder prediction 1 21 - -
Accr6g00043 2134 CDD Bromodomain 1840 1943 - -
Accr6g00043 2134 Pfam QLQ 379 412 IPR014978 GO:0005524|GO:0005634|GO:0006355
Accr6g00043 2134 MobiDBLite consensus disorder prediction 263 291 - -
Accr6g00043 2134 MobiDBLite consensus disorder prediction 1506 1735 - -
Accr6g00043 2134 MobiDBLite consensus disorder prediction 2049 2065 - -
Accr6g00043 2134 MobiDBLite consensus disorder prediction 1659 1675 - -
Accr6g00043 2134 FunFam ATP-dependent helicase BRM 892 1140 - -
Accr6g00043 2134 Gene3D - 892 1140 IPR038718 -
Accr6g00043 2134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1135 1473 IPR027417 -
Accr6g00043 2134 SMART QLQ_2 377 414 IPR014978 GO:0005524|GO:0005634|GO:0006355
Accr6g00043 2134 MobiDBLite consensus disorder prediction 225 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00043 Accr-Chr6 779657 789553 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00043 922 1383 RAD5 or RAD16-like Gene Family AT1G02670 25.655 3.47e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr6g00043 SNF2_N 8.7e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00043 K11647 - gmx:100807104 3180.58