Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00028 ATGGCAACTAATATGCAGAGGCTAATTGGAACAAGTGAAGATGATGAGGAAGAAATGGGAATGGATGTGAAAGAAGAGGATGATGAAGAGGAAGAGAATGTAGGTAATCATGGTGATGCTCCAGAGATGGTAGACGTTCATGGTGGGATGGGAACTGTTAGTGGTAACAACAGTTTTCAACAGCACCAGCAATTTCAAGCGAGCACTCCAGGTGGAGGTACTCGAACATGTAGGCCTCTAGAAGAGAAAGAGAGAACAAAGCTAAGAGAGAGGCATCGTAGGGCTATAACTGCAAGGATTTTGGCAGGCCTTCGGAAGCATGGCAACTATAATCTTAGAGTTAGAGCTGACATAAATGATGTCATTGCTGCTCTGGCAAGGGAAGCTGGATGGGTGGTTCTTCCAGATGGCACTACTTTTCCTTCGAGATCTCAGGGTCAGAGACCAGCTGGTGGTACTTCTACTGTGGTGACTTCATCAGCTTCCCAACAGACTACACCCGCTTCCCTCAAGGGAGCCACTTCAGGCTATAGGAGCCCTTCAGAGTATAATGCAAGTCGATTGAAAGGTGTTTTTATGCCTACTCCAACACCATATGATCTAACCTCAGGTTCCCAGTCTCAATCCTCATCCATGATGGGGAGTGGAGAAGAACATAGAGACAACCATCCTCTCATTGGCAGTTCAATGGATAATGTTGATGAGAAGCAGATTGTGGACATGCCCCACAGACTACCTGAGCGTGATTTTGCTGGTACCTCATATGTTCCAGTTTATGTGATGCTACCGTTGGGTGTCATTAATATGAAGTGTGAACTTGTTGATCCGGATGGTCTATTAAAGCAGCTGAGGGTGTTGAAATCATTGCATGTTGATGGTGTTATGGTTGACTGCTGGTGGGGAATAGTGGAGGCACATGCTCCTCTGGACTATAATTGGAATGGTTACAAGAAACTTTTTCAGATGGTGCGTGAACTTAAGCTAAAGTTGCAGGTTGTGATGTCTTTTCATGAATGTGGAGGCAATTTTGGTGATGATGTTTGTATTCCAATACCACATTGGGTTGCTGAAATTGGTAGGAGCAATCCTGACATTTTTTTCACTGATAGAGAGGGGAGGCACAACCCTGAATGTCTTTCTTGGGGAATAGACAAGGAACGGGTTTTAAGGGGTCGAACTGCTTTAGAGGTTTATTTTGACTTCATGAGAAGCTTCAGGGTAGAGTTTGATGAGTATTTTGAGGATGGTATAATCTCCTTGATTGAAGTTGGACTAGGTCCTTGTGGGGAGCTAAGATATCCATCTTTCCCTGTAAAGCATGGTTGGAGATATCCTGGTATTGGTGAATTCCAGTGCTATGATCAATATTTGTTAAAAAGTCTTAGGAAAGCAGCAGAAACAAGGGGACACCCCACATGGGCTAGAGGACCAGATAATGCTGGTACCTATAATTCGCAACCACACGAAACAGGTTTCTTTTGTGATGGTGGAGATTATGATGGTTACTATGGCAGGTTTTTTCTTAGCTGGTACTCTCAGGTTTTGGTTGATCATGGAAACAGTGTACTTTCTCTGGCAAAATTAGCATTTGAGGGAACCTGCATTGCTGCAAAGCTATCAGGTATTCACTGGTGGTACAAGACAGTGAGCCATGCTGCTGAATTAACTGCTGGGTTTTATAACCCGTGCAATCGTGATGGTTATGCTGCAATCATGACAATGCTAAAGAAGAATGGAGCAAGTTTATACTTAGCTTGCGCTGACCTGCACACATCGAACCAGCATGAGGAGTTTCCAGGGGCATTTTTAGATCCTGAGGGATTAGTCTGGCAGGTGTTGAATGCAGCTTGGGATGTTTGCCTCCCAGTTTCAAGTGAGAATGCACTTCCTTGCCTAAATAGAGTTGGCTATAATAAGATCTTGGATAATGCCAAGCCCATGAATGATCCTGATGGAAAACATTTTACATCATTTACTTACCTGAGACTAAGTCCACTTCTTATGGAGAGACAGAACTTCTTAGAGTTCGAACGATTTGTGAAGAGAATGCATGGGGAGGCCGTTCTTGATCTCCAGGCATAG 2082 0.4395 MATNMQRLIGTSEDDEEEMGMDVKEEDDEEEENVGNHGDAPEMVDVHGGMGTVSGNNSFQQHQQFQASTPGGGTRTCRPLEEKERTKLRERHRRAITARILAGLRKHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQGQRPAGGTSTVVTSSASQQTTPASLKGATSGYRSPSEYNASRLKGVFMPTPTPYDLTSGSQSQSSSMMGSGEEHRDNHPLIGSSMDNVDEKQIVDMPHRLPERDFAGTSYVPVYVMLPLGVINMKCELVDPDGLLKQLRVLKSLHVDGVMVDCWWGIVEAHAPLDYNWNGYKKLFQMVRELKLKLQVVMSFHECGGNFGDDVCIPIPHWVAEIGRSNPDIFFTDREGRHNPECLSWGIDKERVLRGRTALEVYFDFMRSFRVEFDEYFEDGIISLIEVGLGPCGELRYPSFPVKHGWRYPGIGEFQCYDQYLLKSLRKAAETRGHPTWARGPDNAGTYNSQPHETGFFCDGGDYDGYYGRFFLSWYSQVLVDHGNSVLSLAKLAFEGTCIAAKLSGIHWWYKTVSHAAELTAGFYNPCNRDGYAAIMTMLKKNGASLYLACADLHTSNQHEEFPGAFLDPEGLVWQVLNAAWDVCLPVSSENALPCLNRVGYNKILDNAKPMNDPDGKHFTSFTYLRLSPLLMERQNFLEFERFVKRMHGEAVLDLQA 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00028 693 PRINTS Plant beta-amylase signature 674 688 IPR001371 GO:0000272|GO:0016161
Accr6g00028 693 PRINTS Plant beta-amylase signature 416 425 IPR001371 GO:0000272|GO:0016161
Accr6g00028 693 PRINTS Plant beta-amylase signature 659 673 IPR001371 GO:0000272|GO:0016161
Accr6g00028 693 MobiDBLite consensus disorder prediction 15 35 - -
Accr6g00028 693 Gene3D Glycosidases 247 692 - -
Accr6g00028 693 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 290 304 IPR001554 GO:0000272|GO:0016161
Accr6g00028 693 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 311 329 IPR001554 GO:0000272|GO:0016161
Accr6g00028 693 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 608 630 IPR001554 GO:0000272|GO:0016161
Accr6g00028 693 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 568 591 IPR001554 GO:0000272|GO:0016161
Accr6g00028 693 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 499 518 IPR001554 GO:0000272|GO:0016161
Accr6g00028 693 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 550 561 IPR001554 GO:0000272|GO:0016161
Accr6g00028 693 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 426 448 IPR001554 GO:0000272|GO:0016161
Accr6g00028 693 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 333 354 IPR001554 GO:0000272|GO:0016161
Accr6g00028 693 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 533 549 IPR001554 GO:0000272|GO:0016161
Accr6g00028 693 MobiDBLite consensus disorder prediction 1 43 - -
Accr6g00028 693 SUPERFAMILY (Trans)glycosidases 250 688 IPR017853 -
Accr6g00028 693 MobiDBLite consensus disorder prediction 198 215 - -
Accr6g00028 693 MobiDBLite consensus disorder prediction 139 180 - -
Accr6g00028 693 Pfam Glycosyl hydrolase family 14 259 678 IPR001554 GO:0000272|GO:0016161
Accr6g00028 693 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 207 686 IPR001554 GO:0000272|GO:0016161
Accr6g00028 693 MobiDBLite consensus disorder prediction 194 228 - -
Accr6g00028 693 Pfam BES1/BZR1 plant transcription factor, N-terminal 77 206 IPR008540 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00028 Accr-Chr6 501955 507589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00028 1 690 Glycoside Hydrolase AT2G45880 66.189 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Accr6g00028 Glyco_hydro_14 1.2e-103 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00028 K01177 - gmx:100805560 1128.62