Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00013 ATGGGAAGAACTCCCTGCTGCGACAAGAAGGGTTTGAAGAAGGGGCCCTGGACGACTGAAGAGGATGAGCTTCTTGTTAATTTCATCAACAAGAACGGTGGCCATGGCAGCTGGCGTTCTCTCCCTAAGTTGGCAGGTCTGCTTCGCTGTGGGAAGAGTTGCAGGCTAAGGTGGACCAACTATCTGAGGCCTGACATAAAACGTGGCCCATTTAGTGCGGAGGAAGAGAAGCTTGTCATACAGCTTCATGGCATCCTTGGTAATAGGTGGGCGGCGATAGCGTCGCAGATGGCAGGAAGAACAGACAATGAGATAAAGAATCTGTGGAACACTCACTTGAAGAAGCGACTCCAATGCATGGGACTCGACCCTCTCACCCACAAGCCTCTCTCTTGTTCTTCTTCCCGTTGTGATCCCAGCAAGCCCCACGTGTCGACACCGACGACGACTCGCCACATGGCTCAGTGGGAGAGTGCGAGGCTGGAGGCGGAGGCTCGCCTCTCCAAAGATACCTCGCTGTCTCACTATTCCTCCTCCGACTTGTTCCTCCGCCTCTGGAACTCCCAGGTGGGCGACTCCTTCCGCAATATGCACACCGTCTCCTCTCCCGCCTCCTCCTCTTCCGCCAAGTGCACCACCGTCGCTGCTCCCTCTTTCTCTGAGAAGCTCATGGCTGCCTCCGACGACTCTTCCATCTCTAATGACCCGGAAGACTCCTCTGACACCGCCTTGCAGCTCTTGTTGGATTTCCCCATTTACAATGACATGAACTTCCTAGAACCTAACTCTTTCATTTCTCCCCTTTAG 807 0.5415 MGRTPCCDKKGLKKGPWTTEEDELLVNFINKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFSAEEEKLVIQLHGILGNRWAAIASQMAGRTDNEIKNLWNTHLKKRLQCMGLDPLTHKPLSCSSSRCDPSKPHVSTPTTTRHMAQWESARLEAEARLSKDTSLSHYSSSDLFLRLWNSQVGDSFRNMHTVSSPASSSSAKCTTVAAPSFSEKLMAASDDSSISNDPEDSSDTALQLLLDFPIYNDMNFLEPNSFISPL 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00013 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Accr6g00013 268 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Accr6g00013 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Accr6g00013 268 Gene3D - 70 117 - -
Accr6g00013 268 SMART sant 13 64 IPR001005 -
Accr6g00013 268 SMART sant 67 115 IPR001005 -
Accr6g00013 268 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Accr6g00013 268 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Accr6g00013 268 CDD SANT 16 62 IPR001005 -
Accr6g00013 268 Gene3D - 11 68 - -
Accr6g00013 268 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Accr6g00013 268 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Accr6g00013 268 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 218 - -
Accr6g00013 268 CDD SANT 70 113 IPR001005 -
Accr6g00013 268 FunFam MYB transcription factor 69 130 - -
Accr6g00013 268 FunFam Myb transcription factor 11 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00013 Accr-Chr6 325258 326519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g00013 1 262 MYB Transcription Factor Family AT3G61250 63.066 7.93e-115 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr6g00013 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00013 K09422 - mnt:21400317 370.933