Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g00010 ATGTCTTTCACCGGAACTTTGGATAAATGCAAGGCTTGCGATAAGACGGTTCATGTGGTGGACATGATGACCCTCGAAGGCACACCCTACCATAAATCCTGCTTCAAGTGCAGCCACTGCAAGGGCTTTCTCTCGATGAGCAGCTACTCGTGGATGGATGGCGTCCTCTACTGCAAGCCCCATTTTGAGCAGCTTTTCAAGGAATCCGGCAATTTCAGCAAGAACTTTCAATCAGCGAGGGCCACTGAGAGGAATAGCGATCTGTCAAGGACGGCAAGCAAGCTGTCGTCGATGTTCAGCGGAACGCAGGACAAGTGCTCAGTGTGTGAAAAGACAGTGTATCCTCTGGAGAAGATGACGCTGGAAGGAGAGTGCTTCCACAAGTCGTGCTTCAGGTGTGCCCATGCAGGCTGCCCCCTCACCCATTCCTCCTACGCCGCCCTCGACGGCGTCCTCTACTGCAGGCACCACTTCGCTCAGCTCTTCATGGAGAAGGGAAATTACAACCATGTCCTCCAGGCCGCCGCCCACAAGCGCTCCGCCAGCTCTGGCACTCCTCCTGCCGAACCTGAACCTGCTACTGACGACGATAACGCCACCCCTCCTCCTCGCGCCAAAGATGAACATCATCATGATGCCGACGACGACGATGATAAAGAAGACCACTCTTAG 672 0.5446 MSFTGTLDKCKACDKTVHVVDMMTLEGTPYHKSCFKCSHCKGFLSMSSYSWMDGVLYCKPHFEQLFKESGNFSKNFQSARATERNSDLSRTASKLSSMFSGTQDKCSVCEKTVYPLEKMTLEGECFHKSCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYNHVLQAAAHKRSASSGTPPAEPEPATDDDNATPPPRAKDEHHHDADDDDDKEDHS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g00010 223 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Accr6g00010 223 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Accr6g00010 223 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Accr6g00010 223 MobiDBLite consensus disorder prediction 177 223 - -
Accr6g00010 223 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Accr6g00010 223 PANTHER OS06G0237300 PROTEIN 6 79 - -
Accr6g00010 223 MobiDBLite consensus disorder prediction 200 223 - -
Accr6g00010 223 FunFam LIM domain and actin-binding 1 4 74 - -
Accr6g00010 223 FunFam LIM domain and actin-binding 1 100 170 - -
Accr6g00010 223 Pfam LIM domain 106 161 IPR001781 -
Accr6g00010 223 Pfam LIM domain 10 65 IPR001781 -
Accr6g00010 223 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Accr6g00010 223 CDD LIM1_SF3 6 68 - -
Accr6g00010 223 Gene3D Cysteine Rich Protein 6 74 - -
Accr6g00010 223 Gene3D Cysteine Rich Protein 100 170 - -
Accr6g00010 223 SMART lim_4 105 157 IPR001781 -
Accr6g00010 223 SMART lim_4 9 61 IPR001781 -
Accr6g00010 223 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Accr6g00010 223 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g00010 Accr-Chr6 297185 298152 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Accr6g00010 LIM 3.1e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g00010 - K09377 mnt:21389989 335.88