Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g03020 ATGGAGAAAGCATCAGCCTTTCTTTTGTTGGCTTCTTACATCTTCGTCTCTGTTTCCGCTATCGATAGTGATTATGCGCAGTGCAATTGTGACGAAGAAGGGCTTTTGAGCATACATAACATTCTAGAGAGCCAAAGAGTCAGCGACTTCTTTATTGCCATAGCATATTTTTCGATCCCCCTTGAACTCCTCTACTTCGTTAGTCGCTCCAACCTTCCCTTCAAATGGGTGTTCCTTCAATTCATTGCATTCATAGTCCTTTGTGGCTTGACGCATTTGCTTAATGCATATACTTATTACGGACCTCATTCCTTCCATTTGGTGCTCTCCCTTACAATTGCTAAACTCCTTACAGCTCTGGTCTCTTGTGCAACTGCAATTACCCTTTTTACTCTGATTCCTCTTCTTCTCAAAATCAAAGTAAGGGAGCTCTTTTTGAAGCAGAACGTGTTGGAATTAGATCAGGAGATTGGAATGATCAAAAGACAAAAAGAAGCAAGCTGGCATGTCCGGATGCTAACTCGGGAAATTAGGAAGTCTCTGGATAAGCATACAATCTTGTACACCACCCTTGTTGAGCTTTCTAAATCATTGGACTTGCATAACTGCGCTGTTTGGATGCCAAATGAGGATGGACGAGAAATGTACTTAACCCATGAGTTGAAAACAAGCTCCCCCAAGATGTTTCACCATTCCATTCCCATAAATGACCCGGATGTCATAGAGATCAGAAAAAGTAAAGGGGTCAGGATTTTGAGGCCCGAATCAGCACTAGGAGCTGCAAGTAAGGGGGGATCTGGGGAGTCAGGTGCTGTTGCAGCTATTCGTATGCCGATGCTTCATGTTTCAAACTTTAAAGGAGGGACACCTGAGTTAGTTGATACATCCTATGCTATTCTGGTTTTGGTTCTTCCGAATTCAAACTCCAGGGCTTGGAGCCACCAAGAGATGGAGATAGTGGAGGTAGTTGCTGATCAGGTCGCTGTAGCCCTGTCTCATGCATCTGTTCTTGAAGAGTCTCACCTCATGAGGCAGAAACTGGCAGAGCAAAACCGAGCTTTGCAACAGGCTCAAAAGAATGCAATGATGGCTAGTCAGGCAAGGAAGTCATTTGAGAAAGTGATGAGTCATGGTATGCGCAGGCCTATGCATTCAATTCTGGGCTTGCTTTCGATGTTTCAAGAGGACAATTTAAGATCTGAGCAAAAGGTTATAGTTGACACAATGATCAAAGTTGGCCATGTTCTCTCAAGTTTGATCAATGATGTGATGGAGATTTCGGTAAATGATAAAGGAAGCTTCTGGCTGGAGATGAAACCTTTTGATTTACATTTGATGATGAGAGAAGCTGCTTGTATTGCCAAGTGTTTGTGTGTATACAAAGGCTTTAATTTTAAAATTGAAGTCCAGAAGTCGTTGCCTGATCTGGTGATAGGGGACCAGATAACTGGTACAAGTTCACGGTCAGATGGATCAACTTCAACAAGACGCTATGCTGGTGGAAGGCACCACAGCAGTGAATCTAACGAGGGCTTAAGCTTCAGCATGTGCAAAACTCTGGCACAGATGATGCAAGGCAATATCTGGTTATCACGGAATGCTGTAGGATTGGCACAAAGCATGACACTTGCTCTCAAGTTCCAGATAGGACCATCTCACGGAAGATCCATTTTAGCACCTAAAGATTCTCTGGGCTCTCGGTTCAGAGGCCTGAAGGTTTTGTTAACCGATGACGATGATGTAAACAGGACAGTGACAAAGAAACTTCTTGAGAAGTTGGGTTGCCAAGTAACTGCAGTTTCATCAGGGTTTGAATGCCTAGGTGCTATAAGTGCATCAGGGAACACATTCAAAGTCATCCTTTTGGATCTGCACATGCCTGAAATGGATGGTTTTGACGTGGCTATGAGGATACGGAAGTTCCACAGCCGCAACTGGCCCTTGATTATTGCTCTCACGGCAAGTGCCGAAGAAGATGTGATGGATAGATGCCTACGCGTTGGAATGAATGGATTAATTCGAAAACCTATTCTTCTCCCAGAGATAGCAGATGAACTACGAAGAGTCCTGCAACACGCCGGGGAAAAATTGTGA 2094 0.4394 MEKASAFLLLASYIFVSVSAIDSDYAQCNCDEEGLLSIHNILESQRVSDFFIAIAYFSIPLELLYFVSRSNLPFKWVFLQFIAFIVLCGLTHLLNAYTYYGPHSFHLVLSLTIAKLLTALVSCATAITLFTLIPLLLKIKVRELFLKQNVLELDQEIGMIKRQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKSLDLHNCAVWMPNEDGREMYLTHELKTSSPKMFHHSIPINDPDVIEIRKSKGVRILRPESALGAASKGGSGESGAVAAIRMPMLHVSNFKGGTPELVDTSYAILVLVLPNSNSRAWSHQEMEIVEVVADQVAVALSHASVLEESHLMRQKLAEQNRALQQAQKNAMMASQARKSFEKVMSHGMRRPMHSILGLLSMFQEDNLRSEQKVIVDTMIKVGHVLSSLINDVMEISVNDKGSFWLEMKPFDLHLMMREAACIAKCLCVYKGFNFKIEVQKSLPDLVIGDQITGTSSRSDGSTSTRRYAGGRHHSSESNEGLSFSMCKTLAQMMQGNIWLSRNAVGLAQSMTLALKFQIGPSHGRSILAPKDSLGSRFRGLKVLLTDDDDVNRTVTKKLLEKLGCQVTAVSSGFECLGAISASGNTFKVILLDLHMPEMDGFDVAMRIRKFHSRNWPLIIALTASAEEDVMDRCLRVGMNGLIRKPILLPEIADELRRVLQHAGEKL 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g03020 697 Pfam His Kinase A (phospho-acceptor) domain 370 428 IPR003661 GO:0000155|GO:0007165
Accr5g03020 697 FunFam Ethylene receptor 4 334 428 - -
Accr5g03020 697 SMART REC_2 571 686 IPR001789 GO:0000160
Accr5g03020 697 MobiDBLite consensus disorder prediction 484 510 - -
Accr5g03020 697 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 352 432 IPR036097 GO:0000155|GO:0007165
Accr5g03020 697 SUPERFAMILY CheY-like 568 691 IPR011006 -
Accr5g03020 697 Gene3D - 571 696 - -
Accr5g03020 697 SUPERFAMILY GAF domain-like 185 334 - -
Accr5g03020 697 Gene3D - 332 430 - -
Accr5g03020 697 Coils Coil 340 367 - -
Accr5g03020 697 ProSiteProfiles Response regulatory domain profile. 572 690 IPR001789 GO:0000160
Accr5g03020 697 Pfam GAF domain 184 331 IPR003018 GO:0005515
Accr5g03020 697 SMART HisKA_10 367 432 IPR003661 GO:0000155|GO:0007165
Accr5g03020 697 PIRSF Ethylen_sen_hybr_HK 481 697 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Accr5g03020 697 PIRSF Ethylen_sen_hybr_HK 1 483 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Accr5g03020 697 CDD HisKA 365 427 IPR003661 GO:0000155|GO:0007165
Accr5g03020 697 Gene3D - 166 331 IPR029016 -
Accr5g03020 697 Pfam Response regulator receiver domain 573 685 IPR001789 GO:0000160
Accr5g03020 697 CDD REC_ETR-like 571 686 - -
Accr5g03020 697 SMART gaf_1 182 341 IPR003018 GO:0005515
Accr5g03020 697 FunFam Ethylene receptor 569 693 - -
Accr5g03020 697 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 24 481 - -
Accr5g03020 697 MobiDBLite consensus disorder prediction 484 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g03020 Accr-Chr5 55656720 55661348 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g03020 22 695 Miscellaneous Gene Families AT3G04580 59.813 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Accr5g03020 GAF 2.2e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g03020 K14509 - gmx:100805023 1008.05