Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g03013 ATGGGCGGATCCCACCTTGCAGATTGGCCAGAAAATGACTATCGACTCTTTTGTGGTGATCTTGGTAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCTCGATTTCCTTCCTTTAACATGGCACGAGTTGTCAGAGACAAGCGAACTGGAAAAACAAAAGGTTATGGATTTGTAAGCTTTGCCAATCCTGCTGACCTTGCTGCTCTTAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCAATTAAGCTTCGCAAGAGTAAGTGGCAGGAGAGGACAGATTATGAGGCCCGGGAAAAACAGAAGAACCAAGCACAGAAGAAATTGAAATTTCCAAGGAAGAGTATACTGCACAAGTAA 366 0.4153 MGGSHLADWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFANPADLAALKEMNGKYVGNRPIKLRKSKWQERTDYEAREKQKNQAQKKLKFPRKSILHK 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g03013 121 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 85 IPR000504 GO:0003723
Accr5g03013 121 Gene3D - 9 116 IPR012677 -
Accr5g03013 121 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 91 IPR000504 GO:0003723
Accr5g03013 121 MobiDBLite consensus disorder prediction 91 121 - -
Accr5g03013 121 SMART rrm1_1 15 87 IPR000504 GO:0003723
Accr5g03013 121 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 6 104 - -
Accr5g03013 121 SUPERFAMILY RNA-binding domain, RBD 6 95 IPR035979 GO:0003676
Accr5g03013 121 MobiDBLite consensus disorder prediction 91 108 - -
Accr5g03013 121 CDD RRM_RBM42 8 89 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g03013 Accr-Chr5 55576856 55581511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g03013 16 95 Eukaryotic Initiation Factors Gene Family AT1G71770 34.568 5.95e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g03013 K25079 - gmx:100800281 216.083