LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr5g02885	ATGCAAATGCAAGACATTTTTGGATCAGTTCGCCGATCACTGGTGTTTCGTGCTACGCCGGAGAACGAAGAAGCCTCACTAGGAGGAACCCTAGTTGATAAGATCAATTCTTGCATTCGCAAGTCCAGAGTCTTCTCTAAACCTTCTCCCGCGTCTCCGCCAATGCCACCCGTCACAAAGGAATCTTCACCGATGATCCGATGGCGCAAAGGCGAGTTGATCGGATGCGGTGCCTTTGGCCGAGTTTACATGGGCATGAATCTTGATTCTGGAGAGCTTCTAGCAGTTAAACAGGTTCTGATCGCGGCTAGCAGTGCTTCGAAGGAGAAGGCACAGGCTCACATAAAGGAGCTTGAGGAAGAAGTTAAGCTTCTTAAAGATCTTTCTCATCCCAATATTGTTAGATATTTGGGCACAGTTAGGGAGGAGGACACCTTAAATATTCTTCTGGAGTTTGTACCAGGTGGATCCATATCATCACTTTTGGGGAAGTTTGGAGCTTTCCCTGAGGCTGTTATTAGAACTTTCACGCAGCAGTTACTGCTGGGACTTGAGTACTTGCACAAAAATGGAATCATGCACAGGGACATTAAGGGGGCAAATATCCTTGTTGATAATAAAGGGTGCATAAAACTTGCAGATTTTGGGGCGTCCAAACAGGTCGTTGAGCTGGCTACCATTTCCGGTGCCAAGTCTATGAAGGGCACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGCCATAGCTTCTCGGCTGATATATGGAGCGTTGGCTGTACTGTGATTGAAATGGCCACTGGAAAACCTCCCTGGAGCCAGCAGTACCAAGAGGTTGCCGCTCTCTTCCACATAGGAACAACAAAGTCTCATCCACCAATTCCGGACCATCTCTCTATTGGAGCAAAAGATTTTCTATCAAAATGTTTGCAGAAGGAACCAGGGTTAAGGCCATCAGCATCAGAACTGCTCCAGCATCCTTTTGTTACTGGTGAACAATTGGGTTCATTTCCTGGGTCATATACCGCAATGGGAAAATTTGAAGCTTCTTCAACGTCTTGGTCCTCAAACATCGAAACTACCTCAACTGTACATCCTGAGGAAGAAAATAAAGACTATTGGGGAATGGGCAATGATGACGACATGTGTGAGATTGATGACAAAGATGAGTTATCTGAGGGGGCTGTTAAATTTAGATCCTCGATATCAGAAAATATAATGAGTTTCAACCCAATGTCTGATCCCTCTGATGATTGGAGTTGCAAATTTGTTGGGAGTCCAGAACGGGATCGTAGTGGAGTTAGTATTACCACTGACGAAATGTTCAAGCCTTCTGATCACCTGGAGGCTTCCCATGAGGAACACAGAGATTTTTCCCTTTCAGGTGAACCATCAGTGTCTGAGGATGATGATGAGCTCACGGAGTCAAAAATACAAGCCTTTTTGGATGAGAAGGCTCTAGGACTGAAAAAACTGCAGACACCTTTATATGAAGAGTTCTACAACAGTTTAAATACTTCTTGTTCTCCCAGTGCGGTTGAGAAAACGAATGATGAAACTACTTCAAAGTTCTTGAAATTACCTCCGAAAAGCAGGTCCCCAAGTCGGGCACCAATTGGCACCCCGTCAAAAGCAGTTGACCATACCGAAAGTCCTGGGAGTACTGGCAGGTCCTCCCCAAATGTTGGGAATGCGCCTGATCATAATTCACGGAACATACCATCACCGCCCATCGATGAATGGAAAGGATTGCTAGTTGATTCCCAGCAGGAGCCTTGTAGCCCAAGTTTAAGCTTTTCTGAGAGAGAGAGGAAGTGGAAAGAAGAACTTGATCAGGAACTCGAGAGAAAGCGCGAAATGATGCGTCATGCTGGCATAGGCGGGAAAACATCATCTCCAAAGGATCGAGCCTTAAACCGGCAGAGAGAACGGACAAGATTTGCATCACCCAGCAAATGA	1962	0.4577	MQMQDIFGSVRRSLVFRATPENEEASLGGTLVDKINSCIRKSRVFSKPSPASPPMPPVTKESSPMIRWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVLIAASSASKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTFTQQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPDHLSIGAKDFLSKCLQKEPGLRPSASELLQHPFVTGEQLGSFPGSYTAMGKFEASSTSWSSNIETTSTVHPEEENKDYWGMGNDDDMCEIDDKDELSEGAVKFRSSISENIMSFNPMSDPSDDWSCKFVGSPERDRSGVSITTDEMFKPSDHLEASHEEHRDFSLSGEPSVSEDDDELTESKIQAFLDEKALGLKKLQTPLYEEFYNSLNTSCSPSAVEKTNDETTSKFLKLPPKSRSPSRAPIGTPSKAVDHTESPGSTGRSSPNVGNAPDHNSRNIPSPPIDEWKGLLVDSQQEPCSPSLSFSERERKWKEELDQELERKREMMRHAGIGGKTSSPKDRALNRQRERTRFASPSK	653

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr5g02885	653	Pfam	Protein kinase domain	69	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr5g02885	653	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	55	339	-	-
	Accr5g02885	653	SMART	serkin_6	68	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr5g02885	653	FunFam	Mitogen-activated protein kinase kinase kinase 2	67	358	-	-
	Accr5g02885	653	MobiDBLite	consensus disorder prediction	449	464	-	-
	Accr5g02885	653	MobiDBLite	consensus disorder prediction	449	474	-	-
	Accr5g02885	653	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	192	204	IPR008271	GO:0004672\|GO:0006468
	Accr5g02885	653	ProSiteProfiles	Protein kinase domain profile.	68	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr5g02885	653	FunFam	Serine/threonine-protein kinase STE11	64	158	-	-
	Accr5g02885	653	MobiDBLite	consensus disorder prediction	507	529	-	-
	Accr5g02885	653	CDD	STKc_MAPKKK	67	330	-	-
	Accr5g02885	653	MobiDBLite	consensus disorder prediction	507	653	-	-
	Accr5g02885	653	MobiDBLite	consensus disorder prediction	599	625	-	-
	Accr5g02885	653	MobiDBLite	consensus disorder prediction	636	653	-	-
	Accr5g02885	653	SUPERFAMILY	Protein kinase-like (PK-like)	67	331	IPR011009	-
	Accr5g02885	653	ProSitePatterns	Protein kinases ATP-binding region signature.	74	97	IPR017441	GO:0005524
	Accr5g02885	653	MobiDBLite	consensus disorder prediction	548	572	-	-
	Accr5g02885	653	Gene3D	Transferase(Phosphotransferase) domain 1	67	364	-	-
	Accr5g02885	653	Coils	Coil	101	128	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr5g02885	Accr-Chr5	54407210	54412255	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr5g02885	3	653	MAP Kinase Kinase Kinase	AT1G54960	57.593	0.0	698

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Accr5g02885		Pkinase	2.5e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr5g02885	K20606		-	gmx:100779001	977.622