Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02873 ATGTTTACTTCAGTAGCGGATACAGGACATGAAAGTAGTGGAGCGTCAGGATCCATTTTGATTCCAAATCGGTTCGTCTGGCCTTACGGGGGAAGAAGGGTGTTTCTTAGTGGCTCTTTCACAAGGTGGTCTGAACATATACCTATGTCTCCTATGGAGGGATGTCCTACTGCATTCCAAGTTATTTGCAGCTTAATGCCGGGATATCATCAGTACAAATTTAATGTGGATGGTGAGTGGCAGCATGATGAGCAACAGCCATTTGTAAGTGGGAGCTATGGAATAGTGAATACAATTTTCTTGACAAGAGAACCAGATGCTTTGCCTTCCATCTTTATTCCTGAAATACCTGGCAGATCTCACATGGAGGTTGATAATGATGCGTTCGGGCTTGTGGAAGCTAATCTAAGGATGTCAGAGTCTGATCTGGAGGTCTCTCGTCAACGTATAGCTGTGTTTTTGTCTACATATACTGCATATGAGTTGCTTCCTGAGTCAGGCAAGGTCATTGCCTTTGATATCAACTTACCAGTTAAGCAAGCATTCCATGTTCTTTATGAACAGGGCGTGCGAATGGCTCCATTATGGGATTTTCGCAAGAGCCAATTTGTGGGAGTGCTTAGTGCTATGGACTTCATTCTAATATTGAAAGAGCTGGGAAATCATGGGTCAAATTTGACTGAAGAGCAACTTGAGACTCATACTATAGCAGCATGGAAAGAGGTGAAGTTACAACAATGCAGAACAATGGACAATGGGATACCATATCCTCAGCGGTTTGTTCATGCTGGGCCTCATGAGTGCCTAAAAGATGTGGCTTTGAAAATTCTGCAAAACAATGTGGCATCGGTTCCTATCATTCACTCTGCTTCACAGGATGGTTCATTTCCTCAGCTGCTAAACCTTGCTTCCTTATCAGAAATACTAAAATGTATCTGCAGGCACTTTAAGCATTCCTCTAGTTCCTTGCCCATTCTTCATCTACCAATTGGTTCGATACCTTTGGGTACATGGGTGCCAAAAGTTGGCGAACCAAATAGACGGCCACTTGCAATGCTTAGGCCAAATGCATCTCTTGGTGCTGCCCTGTCTCTGTTAATTCAAGCTGAAGTTAGTTCAGTACCAGTTGTGGATGATAATGGCTCGTTGCTTGACATATATTCAAGAAGTGATATTACTGCGTTGGCTAAAGATAAAGCTTATGCACGGATATCCCTTCTTGAAATTAGCATCCATCAGGCATTGCTTTTGGGACAAGATGCAAATTCACCTTATGGTTTTTTCAATGGCCAGAGATGTCATATGTGCTTGAGATCTGATTCACTGCATAAAGTGATGGAGCGGTTAGCTAATCCTGGGGTTAGAAGACTTGTGATTGTGGAGCCGGGCAGCAAGCGTGTGGAGGGTATTATTTCGTTGAGGGATGTGTTCAGATTCTTGTTAGGATAG 1449 0.4313 MFTSVADTGHESSGASGSILIPNRFVWPYGGRRVFLSGSFTRWSEHIPMSPMEGCPTAFQVICSLMPGYHQYKFNVDGEWQHDEQQPFVSGSYGIVNTIFLTREPDALPSIFIPEIPGRSHMEVDNDAFGLVEANLRMSESDLEVSRQRIAVFLSTYTAYELLPESGKVIAFDINLPVKQAFHVLYEQGVRMAPLWDFRKSQFVGVLSAMDFILILKELGNHGSNLTEEQLETHTIAAWKEVKLQQCRTMDNGIPYPQRFVHAGPHECLKDVALKILQNNVASVPIIHSASQDGSFPQLLNLASLSEILKCICRHFKHSSSSLPILHLPIGSIPLGTWVPKVGEPNRRPLAMLRPNASLGAALSLLIQAEVSSVPVVDDNGSLLDIYSRSDITALAKDKAYARISLLEISIHQALLLGQDANSPYGFFNGQRCHMCLRSDSLHKVMERLANPGVRRLVIVEPGSKRVEGIISLRDVFRFLLG 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02873 482 ProSiteProfiles CBS domain profile. 345 403 IPR000644 -
Accr5g02873 482 CDD E_set_AMPKbeta_like_N 22 100 - -
Accr5g02873 482 Gene3D - 139 322 IPR046342 -
Accr5g02873 482 Pfam Glycogen recognition site of AMP-activated protein kinase 21 103 IPR032640 -
Accr5g02873 482 ProSiteProfiles CBS domain profile. 162 224 IPR000644 -
Accr5g02873 482 SUPERFAMILY CBS-domain pair 344 481 IPR046342 -
Accr5g02873 482 Gene3D Immunoglobulins 18 101 IPR013783 -
Accr5g02873 482 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 142 480 - -
Accr5g02873 482 SUPERFAMILY E set domains 21 101 IPR014756 -
Accr5g02873 482 SMART cbs_1 349 397 IPR000644 -
Accr5g02873 482 SMART cbs_1 432 481 IPR000644 -
Accr5g02873 482 SMART cbs_1 168 217 IPR000644 -
Accr5g02873 482 SMART cbs_1 259 313 IPR000644 -
Accr5g02873 482 FunFam Sucrose nonfermenting 4-like protein 18 103 - -
Accr5g02873 482 SUPERFAMILY CBS-domain pair 149 318 IPR046342 -
Accr5g02873 482 Gene3D - 328 482 IPR046342 -
Accr5g02873 482 Pfam CBS domain 347 393 IPR000644 -
Accr5g02873 482 Pfam CBS domain 434 481 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02873 Accr-Chr5 54312040 54317746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02873 30 89 Protein tyrosine phosphatase (PTP) family AT3G52180 37.705 1.75e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02873 - - gmx:100778117 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g02873 5 54312040 54317746 Accr5g02873 5 54312040 54317746 CCT
Accr5g02873 5 54312040 54317746 Accr5g02873 5 54312040 54317746 ECH