Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02872 ATGTCAAACATAACGAGCTGTGACAGTGGTGGGAGTTTCTGCACGAAGAATAGCAGAGAAGATGGAACTAGTATTAAACAGCATCATCCTCAACATTCTTCTGCTCATCATCATCATCATCACCAGTTTCATAGTCCAACTTCTCTTACTTCAACTACTACTAACAGTAACGGTTCTAACGCCAATTCCCAACTGCCTCCTCCTCCTGTTAAGAGGAAAAGAAGCCTCCCAGGAAACCCAGATCCTAGTGCTGAAGTGATTGCTCTATCACCAAGTACTTTGATGGCGAGAAACCGATTCGTATGTGAAATCTGTAACAAAGGATTCCAAAGGGATCAGAATCTGCAGTTGCACCGGCGAGGCCATAACCTGCCATGGAAGCTCAAGCAAAGGCCCACCACAGAAGTTCGAAAACGTGTTTTTGTTTGTCCAGAGCCTTCGTGCGTCCACCATAACCCAAGTCGAGCACTGGGTGACCTCACTGGCATCAAAAAGCACTTCTCAAGAAAACACGGCGAGAAGAAATGGAAGTGCGAGAAATGCTCGAAGAGATACGCAGTCCAGTCCGACTGGAAAGCCCATTCCAAGATCTGCGGTACTAGGGAATACAAGTGTGACTGTGGCACCGTATTCTCCAGACGCGATAGCTTTATCACCCATCGAGCTTTCTGCGACGCGTTGGCCGAGGAGAATAATAAAGCCAACAATGAAGGACTACTAGGGCCAAAATTATCGGGTCCAAATTCAAACTCACTAGGTCAACTTCAAATCCCAAATAATCCTGTTTCTTCATTGCCACTCAACTCCAACTTCATCAACCCACAAAACGGGACGCCCCATTATAACCATTGTGATGAAATTAAGCATCCACTATCACACCTTCATCAGGAGCTTTTGGAATTTCCAGCAAAACCATTCAACTACATGACTGGAAGCGTATTCGCAAGAAGCCTTTCGTCAAACAGTTCCTGTTCATCACTTCAACTGGGTTCAACTAGTTCCCTGAGCATGTTGGAAGAAAACGAGCACCAGCCAGGTGGATCGGCCCACATGTCAGCCACGGCATTGCTGCAGAAAGCAGCTCAAATGGGAGCAACCATGAGTGACAGTACTAACACCTCGTGCATGGCACCCTCATCATTGGGACACAATAACAACAACAACTACTTCATGAACAGTGGCCAATCTGATATGTCATCATCTCAGTATTTCAGCGGAAATAATAATAGCTTCGGGATGAACAGTGTGGATATGTTCAATGCTATAATGGACCAAAGCAAGGCGTTGTCGAAGATGATAGAGCAGAACAGCAGAAGCAATAATAATATGAATAACAGTGGAGTTTTGCAGGGTAAAGGAAGTGGGGATGTGACGACACTGGATTTGTTGGGGATTGGAGGAGGAGGAGGGGGTGGTGGTGCTCATGATGCTTTTCTATGGCGCCAAGCAGGCTGA 1455 0.4612 MSNITSCDSGGSFCTKNSREDGTSIKQHHPQHSSAHHHHHHQFHSPTSLTSTTTNSNGSNANSQLPPPPVKRKRSLPGNPDPSAEVIALSPSTLMARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRPTTEVRKRVFVCPEPSCVHHNPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTVFSRRDSFITHRAFCDALAEENNKANNEGLLGPKLSGPNSNSLGQLQIPNNPVSSLPLNSNFINPQNGTPHYNHCDEIKHPLSHLHQELLEFPAKPFNYMTGSVFARSLSSNSSCSSLQLGSTSSLSMLEENEHQPGGSAHMSATALLQKAAQMGATMSDSTNTSCMAPSSLGHNNNNNYFMNSGQSDMSSSQYFSGNNNSFGMNSVDMFNAIMDQSKALSKMIEQNSRSNNNMNNSGVLQGKGSGDVTTLDLLGIGGGGGGGGAHDAFLWRQAG 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02872 484 MobiDBLite consensus disorder prediction 45 66 - -
Accr5g02872 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 122 IPR013087 -
Accr5g02872 484 Pfam Zinc finger, C2H2 type 100 122 IPR013087 -
Accr5g02872 484 FunFam protein indeterminate-domain 12-like 79 147 - -
Accr5g02872 484 FunFam protein indeterminate-domain 5, chloroplastic-like 154 233 - -
Accr5g02872 484 SUPERFAMILY beta-beta-alpha zinc fingers 99 196 IPR036236 -
Accr5g02872 484 Gene3D Classic Zinc Finger 100 140 - -
Accr5g02872 484 MobiDBLite consensus disorder prediction 30 44 - -
Accr5g02872 484 SMART c2h2final6 141 171 IPR013087 -
Accr5g02872 484 SMART c2h2final6 176 196 IPR013087 -
Accr5g02872 484 SMART c2h2final6 100 122 IPR013087 -
Accr5g02872 484 MobiDBLite consensus disorder prediction 18 85 - -
Accr5g02872 484 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 42 445 IPR031140 -
Accr5g02872 484 Gene3D Classic Zinc Finger 154 235 - -
Accr5g02872 484 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02872 Accr-Chr5 54283789 54286702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02872 65 368 IDZ Gene Family AT3G50700 56.923 4.64e-108 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr5g02872 zf-C2H2 0.0048 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02872 - - pcin:129304381 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g01932 2 53693799 53697175 Accr5g02872 5 54283789 54286702 CCT
Accr5g02872 5 54283789 54286702 Accr5g02872 5 54283789 54286702 CCT
Accr5g02872 5 54283789 54286702 Accr5g02872 5 54283789 54286702 ECH