Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Accr5g02870 | ATGGATCATGCTCGATCGACCTCGGGGAATGCCGAGGATAGCGTAGGGATTCCAGATGACTTGCGATGTAAGAGGTCGGATGGGAAACAGTGGAGATGCACTGCAATGTCCATGCCAGATAAAACTGTCTGTGAGAAGCACTATATCCAGGCAAAGAAGAGGGCAGCTAATTCTGCCATGAGAGCTAGTCTTAAGAAGGCTAAGAGAAAGTCATTAGGTGACAGTGACATTTATCTAGAGAGCAAGAGTGATGATGTTGACATGCCACTCGCAAGCATGAAAGTTGAACAGCATTCGGCCTCTGGAAAGAACAAGGCATCAAAAAATCAGTTCCGATATACAGCAGAGACACCAACCACAAGGACCCCCTCCGGACGCAATGCCCCAAAGCTAAATGACGATTCACAAGATGATATTCCCCAGTATGAAGAAAATTGGATGTCTTATGAGTCACCACCTGCTTCTCGAATGGACTTAACCAGGAAAAGATCTCAAAGAAATTTAGATGTCAATGCTGCTACAGAATACTCGGATGGAAGTACAGATTCATCTGATGACACTGGTGGGCAAACTTGCCATCAATGTCGAAGGAATGATAGAGACAGAGTTATTTGGTGTTTAAGATGTGATAGGAGAGGATACTGTGAAAGCTGTATATTAACATGGTATTCAGACATGTCATTGGATGAAATTCAGATGACTTGTCCTGCCTGCCGTGGCACCTGTAATTGCAAAATTTGCTTACGTGGTGATAATTCAATCAAGGTTCGGATTCGGGAGATACCTGTTCTAGACAAGTTACAATATCTCCACGTGCTGCTGTCATCAGTACTTCCTGTGGTAAAGCAGATCCATCAGGAGCAGTGTTATGAAGTTGAACTTGAAAAGAAGTTGCGTGGGATTGAAATAGATCTTCCCAGGACAAAACTGAATGCAGATGAGCAAATGTGCTGTAATTTCTGTCGGATACCCATTACTGATTATCACCGACACTGCCCAAATTGTACATATGATTTATGCCTTAATTGCTGTCAAGATCTTCGAGAGGCAAATGTAAATCCAGAAAAAATAACCCCAACAGATGAAGCAAAACTTTCAAATCAAAATTTGCTATATAAGTTGCCTGATTGGAGATCCAACAGTGACGGTAGCATTCCATGTCCCCCGAAGAAATATGGTGGCTGTGGTTATTCACCATTGAATTTAAGCCGCATCTTCAAGATGAATTGGGTTGCAAAATTGGTGAAAAATGCAGAGGAGATGGTTAGTGGCTGCCAGATTAATGAAATTGGAGGATCAGAAACCAATTTGAATGATCTCAAACTTTACCAATATTCTCACAGGGAGGTCAATGATGATAATTTTCTGTACTGTCCAGCATCTGAAGATCTCAAAACTGATGGGATAGGAAATTTCAGAAAGCACTGGAAAAATGGTGAACCCATAATCGTCAAGCAAGTATTTGATAGGTCATCAAGCTGGGATCCAATGGCTATATGGCGAGGAGTTCGAGAGACAGCAGATGAGAAAATGAAAGAAACTGAGAACAGGGTGGTTAAGGCTATGGATTGTTTAACCTGGTCAGAGATAGATATTGAACTCAATGAATTCATGAAAGGGTACTTTGAGGGGCGTACCCATGAGAATGGTTTGCCACAATTATTGAAGTTGAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTTTATTGCAGCAAAGACCTGAATTTATCCGCAAGCTGCCTTTACTTGAATATATTCACTCAAAGTGGGGCCTTCTTAATGTTGCAGCTAAATTGCCTCATTACTCCTTAGAAAATGATGTAGGACCCAAGATTTATATATCATATGGGGTCAATGAGGAACTTGGTAATGGTGACTCAGTGACCAATCTCCACTTCAATATGCGTGACATGGTCTATCTTTTGGTCCATACAAGTGAAGTGAAGCCAAAGAACTTGCAGGGAATAAAAAGTGAAAAGATACAGAAATCATTGGATGAAAATGAATTGCCTGTGGATCCACAAATATCTTCAGTGGCGAGTCCAGCTGATTCATCACTGGGCACCGAGAAAAACGGACTGGATTTGGATTCAAATGAGAAAACGTCAATTATCAATAAAGGGTTTGAAAATTATTCTAGTGCAGAAGGGGATATGATCAATTCCGAGCTTCCAGTCAAGGATGGAGATATCGGGGAGGAAACAGATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCAAAGCTAACTGAATTTTTAAAAACACATTGGAAAGAATTTGCGCAGCCAGATTATATAGTAAATAAATTTGATGCAAGGCCTCTTTATGATGGAGTTATCTTTCTCAACAGACGCCATAAAAGGAAGTTGAAGGAAGAATTTGGAGTGGAGCCATGGTCATTTGAACAGTGTGTGGGGGAAGCTGTATTTGTTCCTGCAGGGTGCCCTTTTCAAGCAAGAAATGTTCAGTCCACTGTTCAGCTGGGCCTTGATTTCTTATCGCCGGAAAGCTTGGGGGAGGCTGTGAGATTGGCTGAGGATGTCCGCCGTCTGCCAAATGAACATGAAGCCAAGCATCAAGTATTGGAGGTTGGGAAGATATCACTTTATGCCGCAAGTTCAGCCATCAAAGAAGTTCAGAAACTCGTTCTTGACCCAAAACTTGGTGCAGAGATTGGATTTGGGGACCCTAAGTTGACTGCAATGGTTGCTGAGAACTACGAGAAGATGGTTAAGCGAAGACAGATTTCTTGTGCTTGA | 2772 | 0.4203 | MDHARSTSGNAEDSVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRASLKKAKRKSLGDSDIYLESKSDDVDMPLASMKVEQHSASGKNKASKNQFRYTAETPTTRTPSGRNAPKLNDDSQDDIPQYEENWMSYESPPASRMDLTRKRSQRNLDVNAATEYSDGSTDSSDDTGGQTCHQCRRNDRDRVIWCLRCDRRGYCESCILTWYSDMSLDEIQMTCPACRGTCNCKICLRGDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHQEQCYEVELEKKLRGIEIDLPRTKLNADEQMCCNFCRIPITDYHRHCPNCTYDLCLNCCQDLREANVNPEKITPTDEAKLSNQNLLYKLPDWRSNSDGSIPCPPKKYGGCGYSPLNLSRIFKMNWVAKLVKNAEEMVSGCQINEIGGSETNLNDLKLYQYSHREVNDDNFLYCPASEDLKTDGIGNFRKHWKNGEPIIVKQVFDRSSSWDPMAIWRGVRETADEKMKETENRVVKAMDCLTWSEIDIELNEFMKGYFEGRTHENGLPQLLKLKDWPSPSASEEFLLQQRPEFIRKLPLLEYIHSKWGLLNVAAKLPHYSLENDVGPKIYISYGVNEELGNGDSVTNLHFNMRDMVYLLVHTSEVKPKNLQGIKSEKIQKSLDENELPVDPQISSVASPADSSLGTEKNGLDLDSNEKTSIINKGFENYSSAEGDMINSELPVKDGDIGEETDPGVLWDVFRRQDVPKLTEFLKTHWKEFAQPDYIVNKFDARPLYDGVIFLNRRHKRKLKEEFGVEPWSFEQCVGEAVFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEDVRRLPNEHEAKHQVLEVGKISLYAASSAIKEVQKLVLDPKLGAEIGFGDPKLTAMVAENYEKMVKRRQISCA | 923 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Accr5g02870 | 923 | Gene3D | Cupin | 447 | 862 | - | - | |
Accr5g02870 | 923 | MobiDBLite | consensus disorder prediction | 668 | 696 | - | - | |
Accr5g02870 | 923 | MobiDBLite | consensus disorder prediction | 94 | 138 | - | - | |
Accr5g02870 | 923 | MobiDBLite | consensus disorder prediction | 167 | 191 | - | - | |
Accr5g02870 | 923 | Pfam | Zinc-finger domain of monoamine-oxidase A repressor R1 | 185 | 252 | IPR018866 | - | |
Accr5g02870 | 923 | MobiDBLite | consensus disorder prediction | 167 | 192 | - | - | |
Accr5g02870 | 923 | SUPERFAMILY | Clavaminate synthase-like | 473 | 863 | - | - | |
Accr5g02870 | 923 | ProSiteProfiles | JmjC domain profile. | 589 | 853 | IPR003347 | - | |
Accr5g02870 | 923 | MobiDBLite | consensus disorder prediction | 97 | 130 | - | - | |
Accr5g02870 | 923 | Pfam | WRC | 18 | 58 | IPR014977 | - | |
Accr5g02870 | 923 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Accr5g02870 | 923 | PANTHER | JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN | 19 | 887 | IPR045109 | GO:0032454|GO:0033169 | |
Accr5g02870 | 923 | SMART | cupin_9 | 570 | 853 | IPR003347 | - | |
Accr5g02870 | 923 | MobiDBLite | consensus disorder prediction | 675 | 696 | - | - | |
Accr5g02870 | 923 | Pfam | JmjC domain, hydroxylase | 739 | 832 | IPR003347 | - | |
Accr5g02870 | 923 | ProSiteProfiles | WRC domain profile. | 17 | 61 | IPR014977 | - | |
Accr5g02870 | 923 | ProSiteProfiles | Zinc finger RING-type profile. | 192 | 239 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Accr5g02870 | Accr-Chr5 | 54275665 | 54281647 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Accr5g02870 | 18 | 58 | GRF Transcription Factor Family | AT3G13960 | 46.341 | 2.35e-06 | 49.3 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Jumonji | Accr5g02870 | JmjC | 4.2e-07 | CL0029 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Accr5g02870 | K15601 | - | gmx:100792166 | 1362.82 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Accr5g02870 | 5 | 54275665 | 54281647 | Accr5g02870 | 5 | 54275665 | 54281647 | ECH |