Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02863 ATGGATGGTATGGACGCATCTTCCGATCAAGTCATTGCAGAAATGCTAGAAATGGGGTTTGAATATGCCAATGTCGTGCAAGCTTTGAAAGCAGTAGGTCCATCTACTCATAGTGCAGTGGAGTTTATCCTGAATAATGCTGGTAGAAATAGCGGTAGAACATCTCCTGCCAGTGTTAATAATTCCAAATTTCACAAGGGCAGCGAGAAGGGTCTCAGAAAAAGGGACTTGGCCTCATCCCATTCCGTAAGTTACGTTCGACAGTCTAGCATCCTGGACCATCTCCGAGCCACTAATGAATCCACAAAAAGAAAGACAGATACTGTACTCGGTGTACCATTCAGTAGGTTGGAAGTTCCTTCAGGCAATGTGGAAGAGGCCAAGGAGCCTTTGTGTGACATGGATGTTGATTCAAATATCTTGTCAGGAAATTGTAAGGTTGATTCTCTGGATGAATTGGATGGTTCATCACATTGGGAGCAGAGAGCTAGCAATCTCCTGCAGGAGCATTTTGGCTTTTCATGCTTGAAGAGTTTTCAAAAGGAAGCCCTGATTGCTTGGGTAACTCATAAAGACTGTCTTGTCCTGGCTGCAACGGGATCTGGAAAATCGTTGTGCTTTCAGATTCCTGCATTGCTGTCTGGGAAAGTGGTGGTTGTGATTTCACCCTTAATAAGCCTGATGCATGATCAATGCTTAAAGCTAGCAAGACATGGGATCAGTGCTTGCTTTCTTGGGTCTGGGCAACCTGACAATACTGTTGAACAGAAAGCAATGAGAGGCATGTACAGCATAGTATATGTATGCCCAGAGACGGTTCTAAGATTGATTGAACCACTACAGAAGCTTGCAAAAAGTCATGGTATTGCTTTATTCGCAATTGATGAAGTGCACTGTGTTTCTAAATGGGGCCATGATTTCCGGCCAGACTACAGGCGACTGTCTGCATTAAGGGAAAATTTCAGTGCTAGCAAGCTAGAATTCCTGAAATTTGATGTACCTCTGGTGGCTTTGACTGCTACAGCTACCAACCTAGTTCGAGAGGATGTTTTAAAGTCACTGCATATGTCAAAAGAAACAAAGATTGTTCTCACTTCCTTTTTCCGGCCTAATTTACGGTTCATTGTAAGGCATAGCAAGACATCTTCATCTTCTTATGGGAAAGATTTTCATGAGCTAGTTGAACTATATGGTAAAACGCAAAAGTCAGTTGACAAGAAAAAAGAATTTATACCAGAGGAATCACATGATGTTTTCAATAGCTCTGATGCCAGTAGAATCTGTGAGGTTGACAGTCTTTCTCCTTATGACTTGGATGGTGACCAAGATGATTACAGTGAAGGAGATAACAGTGTATTGCATTCAAGAAGCACTAGTGGTTCTATAAATGGAAAAGAATTGTCAGTTGAGTACCTGGAAAACGACATTGATGTCTTTCAAAGTGTGGATGACTGGGATGTTGCCTGCGGTGAATTCTGTGGACAACCTTCTCAAAAGGAATGGAAGTTATCTGAGATTGTTGATCCACCCAATAAATCAGAAGAAAGACTTAGACTTCTTAAAGAGCCTTTAGAGCGAGGACCAACAATCATATATGTACCCACCAGAAAAGAAACGCTGAACATTGCAAAGTATCTATGTGAATGTGGTGTGAAGGTTGCTGCTTATAATGCATCGCTGCCCAAATCACATCTAAGAAGGGTACACAAGGATTTTCATGAAAACACATTAGAGGTTGTTGTTGCAACAGTGGCTTTTGGAATGGGGATTGACAAATTGAATGTCAGAAGAATCATCCATTACGGTTGGCCACAGAGTTTAGAAGCCTATTACCAAGAAGCTGGTCGGGCTGGACGAGATGGTAAATTAGCAGATTGCATTCTTTATGCAAACCTATCAAGGGAACCGTCACTTTTGCCCAGTCATAGAAGTGAAGATCAGTTAAAACATGCCTATGTCATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATCCTGTAGGGCAGAGACTCTCGTGAAATACTTTGGAGAGGACTTCCAAAATGAAAAGTGTCTCATATGTGATGTGTGTGTTGATGGACCACCTCAAATGCAAAATCTGAGAGAGGAGGCATGTACTTTGCTACAAGCGATAGCTGAAAATTATGGACAAAGCTCTGATGTGGATGGCTTATATGATGGCGATATACATTTTGATCCTCAAGCAAGAAGAATTAAAGGGAGGCTTAGTCTTAATATGGTTGTTAGGAAGATAAGGGAGCAGTCTCAAAAATTTTTGACGACTGAGATGTTATGGTGGAGAGGTCTTGCTCGAGTTATGGAACAGAAAGGATACATCAGGGAGGGAGATTGCAAGATTAAGTACCCGGAACCGACAAAAGTGGGATTGGAATTTGTCAAGTCAAATAGTGAGCAAGCTTTGTATGTTTACCCTGAGGCAGATATGGTGCTTGCGGCGAAGAGCAACCATAGCAAACCATACTCCTCATTCTCAGATTGGGGAAAAGGTTGGGCTGATCCTGAGATTCGTCGCCAGAGGCTCCAAAGAATGCAACTCAATAGGAAGCCACATATGCTGTCAAGTCCTAGAAAATCCCATAAGAGAAAAGCTGTTAGGGTGAAGCCTGATCTGAGGACTTGTCGTGGGAGACTAGCTGCAAAACTCTCCAAACCTACGTGA 2685 0.4223 MDGMDASSDQVIAEMLEMGFEYANVVQALKAVGPSTHSAVEFILNNAGRNSGRTSPASVNNSKFHKGSEKGLRKRDLASSHSVSYVRQSSILDHLRATNESTKRKTDTVLGVPFSRLEVPSGNVEEAKEPLCDMDVDSNILSGNCKVDSLDELDGSSHWEQRASNLLQEHFGFSCLKSFQKEALIAWVTHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLKLARHGISACFLGSGQPDNTVEQKAMRGMYSIVYVCPETVLRLIEPLQKLAKSHGIALFAIDEVHCVSKWGHDFRPDYRRLSALRENFSASKLEFLKFDVPLVALTATATNLVREDVLKSLHMSKETKIVLTSFFRPNLRFIVRHSKTSSSSYGKDFHELVELYGKTQKSVDKKKEFIPEESHDVFNSSDASRICEVDSLSPYDLDGDQDDYSEGDNSVLHSRSTSGSINGKELSVEYLENDIDVFQSVDDWDVACGEFCGQPSQKEWKLSEIVDPPNKSEERLRLLKEPLERGPTIIYVPTRKETLNIAKYLCECGVKVAAYNASLPKSHLRRVHKDFHENTLEVVVATVAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLSREPSLLPSHRSEDQLKHAYVMLSDCFRYGMNTSSCRAETLVKYFGEDFQNEKCLICDVCVDGPPQMQNLREEACTLLQAIAENYGQSSDVDGLYDGDIHFDPQARRIKGRLSLNMVVRKIREQSQKFLTTEMLWWRGLARVMEQKGYIREGDCKIKYPEPTKVGLEFVKSNSEQALYVYPEADMVLAAKSNHSKPYSSFSDWGKGWADPEIRRQRLQRMQLNRKPHMLSSPRKSHKRKAVRVKPDLRTCRGRLAAKLSKPT 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02863 894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 632 IPR027417 -
Accr5g02863 894 Gene3D - 634 814 IPR036388 -
Accr5g02863 894 Pfam Helicase conserved C-terminal domain 517 620 IPR001650 -
Accr5g02863 894 FunFam ATP-dependent DNA helicase 146 368 - -
Accr5g02863 894 Pfam RecQ zinc-binding 642 692 IPR032284 -
Accr5g02863 894 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 360 IPR014001 -
Accr5g02863 894 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 512 667 IPR001650 -
Accr5g02863 894 MobiDBLite consensus disorder prediction 50 81 - -
Accr5g02863 894 PANTHER DNA HELICASE RECQ FAMILY MEMBER 154 812 - -
Accr5g02863 894 SUPERFAMILY UBA-like 7 47 IPR009060 GO:0005515
Accr5g02863 894 FunFam ATP-dependent DNA helicase 503 630 - -
Accr5g02863 894 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 6 46 IPR015940 -
Accr5g02863 894 Gene3D - 503 630 IPR027417 -
Accr5g02863 894 SMART ultradead3 172 377 IPR014001 -
Accr5g02863 894 CDD DEXHc_RecQ 167 367 - -
Accr5g02863 894 Gene3D - 4 47 - -
Accr5g02863 894 SMART helicmild6 540 621 IPR001650 -
Accr5g02863 894 MobiDBLite consensus disorder prediction 50 65 - -
Accr5g02863 894 Pfam DEAD/DEAH box helicase 179 343 IPR011545 GO:0003676|GO:0005524
Accr5g02863 894 NCBIfam RecQ family ATP-dependent DNA helicase 166 393 IPR004589 GO:0004386|GO:0006310
Accr5g02863 894 Gene3D - 138 368 IPR027417 -
Accr5g02863 894 MobiDBLite consensus disorder prediction 439 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02863 Accr-Chr5 54239344 54249215 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02863 498 621 Eukaryotic Initiation Factors Gene Family AT5G11170 29.032 3.89e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02863 K10900 - qsa:O6P43_011098 1155.97