Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02850 ATGAGTCGCCTGTCAAGCCGCACTATTTATGTTGGCAATCTTCCTGGTGATGTTCGTTTGAGAGAAGTTGAGGATCTTTTCTATAAGTATGGTCCTATTGTTGACATTGATTTGAAAATCCCTCCAAGACCACCTGGCTATGCTTTTGTGAAGTTTGAGGATCGTCGTGATGCTGAAGATGCTATTCGCTATCGGGATGGTTGTAATTTTGATGGTTTCCGACTGCGAGTTGAATTTGCTCACGGTGGGCGGGGATATTCATCATCCGTTGACCGTTACAGTAGTTATAGTGGTGGTAGCGGTAGCCGTGGAGCTGCCAGGCGTTCAAACTATCGTGTTATGGTCACTGGATTACCCCCTTCAGCTTCATGGCAAGACTTGAAGGATCATATGCGTAAAGCTGGTGATGTATGTTTCTCTGAAGTCTTTCAGGAGCGTGGTGGCATGACTGGGATCGTGGATTATACTAATTATGATGACATGAAGTATGCTATCAGGAAACTTGATGACTCAGAGTTCCGGAATGCATTTTCTCGCGCATACATACGGGTGAGGGAATATGATCGACGAAGTTATTCTAGGAGTCCCAGCCGTGATTCAAGGAGGAGCTATTCTAGAAGCTATAGCCGTAGTCCTTATAGGTCACAAAGTCGAAGCCGCAGTTGGAGTCAGGATCATAGTTATAGAGGCAGGGGCAGAAGCTATTCACCCAAGGTAAAACGCTCAAGACGTTCAATATCCCTTTCAAGGTTAGTTGCTACTTTACCTCCTTTTCTGTGTTCTTGTTTTTCTGATTTTAGTTTATACGGTGATTACACATTTACATGA 828 0.442 MSRLSSRTIYVGNLPGDVRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVKFEDRRDAEDAIRYRDGCNFDGFRLRVEFAHGGRGYSSSVDRYSSYSGGSGSRGAARRSNYRVMVTGLPPSASWQDLKDHMRKAGDVCFSEVFQERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRRSYSRSPSRDSRRSYSRSYSRSPYRSQSRSRSWSQDHSYRGRGRSYSPKVKRSRRSISLSRLVATLPPFLCSCFSDFSLYGDYTFT 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02850 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 75 IPR000504 GO:0003723
Accr5g02850 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Accr5g02850 275 CDD RRM2_SF2_plant_like 111 186 - -
Accr5g02850 275 MobiDBLite consensus disorder prediction 192 239 - -
Accr5g02850 275 MobiDBLite consensus disorder prediction 206 223 - -
Accr5g02850 275 Gene3D - 111 188 IPR012677 -
Accr5g02850 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Accr5g02850 275 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Accr5g02850 275 Gene3D - 2 110 IPR012677 -
Accr5g02850 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Accr5g02850 275 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 244 - -
Accr5g02850 275 SUPERFAMILY RNA-binding domain, RBD 6 178 IPR035979 GO:0003676
Accr5g02850 275 SMART rrm1_1 8 78 IPR000504 GO:0003723
Accr5g02850 275 SMART rrm1_1 112 181 IPR000504 GO:0003723
Accr5g02850 275 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02850 Accr-Chr5 54156333 54159848 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02850 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.099 8.90e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02850 K12890 - gmx:100794282 335.109