Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02830 ATGTCGTATCGCCCTGCCGCTAACTCCAGGACTGAGGTCCGTCGGAGTCGATACAAGGTGGCCGTAGATGCCGAGGAAGGTCGGAGACGGCGAGAGGATACCATGGTCGAGATCCGAAAGATCCGTAGAGAAGAGAGTTTGCAGAAGAAGAGGCGCGAGGGCCTTCAAGCTCAGCAGATGCCTTCTTCCCTCCACTCTACTGCCGTAGAGAAGAAGTTGGAATTCCTGCCATCCATGGTTGCAGGCGTTTTGACAGATGATCCCAACCTGCAGCTTGAATCGACAACTCAGTTTCGAAAGTTGCTTTCAATTGAGCGCAGCCCACCAATTGAGGAGGTTATTCAAGCTGGTGTAGTTTCTCGTTTTGTTGAGTTTTTGATGAGAGAAGACTTTCCTCAATTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAACACTAAAGTGGTGGTTGATCATGGTGCTGTTCCGATTTTTGTCAAACTCCTTGGTTCTCCAAGTGATGATGTCCGGGAACAGGCTGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCCAGGTGCCGTGATCTTGTTCTCGGTCATGGGGCCTTGGTTCCTCTGCTGGCACAGTTGAATGAGCAAGCTAAGCTTTCTATGCTTAGAAATGCTACCTGGACGCTTTCAAATTTCTGCAGGGGCAAGCCACAACCTCCTTTTGAACAGGTAAAACCTGCACTCCCTGCTCTCGCCCATCTTATCCACTCAAATGATGAAGAAGTCTTGACTGATGCTTGCTGGGCACTTTCATATCTTTCTGATGGTACAAATGACAAAATTCAAGCTGTAATTGAAGCTGCCATATGTGGTCGGCTTGTTGAGCTTTTGTTGCATTCATCCCCTTCTGTGCTTATTCCTGCTCTTCGTACAATTGGAAATATTGTCACTGGTGATGATATGCAGACTCAGGTTATAATCAACCATCAAGCACTTCCTTGTCTTTTGAATCTATTAACAAACAACTATAAGAAAAGCATAAAGAAGGAAGCCTGTTGGACCATATCAAATATCACAGCTGGGAATAAACAACAGATTCAGGCTGTAATTGAGGCTAATTTAATCGGTCCTCTCGTTGATCTTCTTCAAAATGCTGAGTTTGATATTAAGAAAGAGGCCGCTTGGGCTATCTCTAATGCTACATCTGGTGGATCTCATGATCAAATCAAGTACCTGGTTAGTCAGGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTGCCCTGATCCTAGAATTGTGACTGTTTGCCTGGAGGGGCTTGAAAACATCTTGAAGGTTGGAGAAGCTGATAAAAATATGGGTAACACGGGGGATGTGAGTCTCTATGCCCAAGCAGTGAAAATTCTGGAGACATATTGGTTGGAGGAAGAAGATGAGACTATGCCTCCAGGGGACACTTCCCAGTCAGGGTTCAACTTTGATGGCTCTGAGGTTCCTGCTGTGCCTTCTGGGGGATTCAACTTTAACTGA 1524 0.4593 MSYRPAANSRTEVRRSRYKVAVDAEEGRRRREDTMVEIRKIRREESLQKKRREGLQAQQMPSSLHSTAVEKKLEFLPSMVAGVLTDDPNLQLESTTQFRKLLSIERSPPIEEVIQAGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVVDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALVPLLAQLNEQAKLSMLRNATWTLSNFCRGKPQPPFEQVKPALPALAHLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAAICGRLVELLLHSSPSVLIPALRTIGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANLIGPLVDLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNMGNTGDVSLYAQAVKILETYWLEEEDETMPPGDTSQSGFNFDGSEVPAVPSGGFNFN 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02830 507 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Accr5g02830 507 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Accr5g02830 507 FunFam Importin subunit alpha 13 52 - -
Accr5g02830 507 Gene3D - 13 52 IPR036975 GO:0006606
Accr5g02830 507 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Accr5g02830 507 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Accr5g02830 507 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Accr5g02830 507 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Accr5g02830 507 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Accr5g02830 507 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Accr5g02830 507 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Accr5g02830 507 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Accr5g02830 507 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Accr5g02830 507 SUPERFAMILY ARM repeat 16 476 IPR016024 -
Accr5g02830 507 PANTHER IMPORTIN ALPHA 14 476 - -
Accr5g02830 507 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Accr5g02830 507 FunFam Importin subunit alpha 74 476 - -
Accr5g02830 507 PIRSF Importin_alpha 450 506 IPR024931 GO:0005737|GO:0006606|GO:0061608
Accr5g02830 507 PIRSF Importin_alpha 5 459 IPR024931 GO:0005737|GO:0006606|GO:0061608
Accr5g02830 507 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Accr5g02830 507 Gene3D - 75 472 IPR011989 -
Accr5g02830 507 SMART arm_5 360 400 IPR000225 GO:0005515
Accr5g02830 507 SMART arm_5 106 147 IPR000225 GO:0005515
Accr5g02830 507 SMART arm_5 234 273 IPR000225 GO:0005515
Accr5g02830 507 SMART arm_5 403 443 IPR000225 GO:0005515
Accr5g02830 507 SMART arm_5 149 189 IPR000225 GO:0005515
Accr5g02830 507 SMART arm_5 190 232 IPR000225 GO:0005515
Accr5g02830 507 SMART arm_5 275 315 IPR000225 GO:0005515
Accr5g02830 507 SMART arm_5 317 358 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02830 Accr-Chr5 54036381 54040709 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02830 132 392 U-box Gene Family AT3G46510 23.755 2.17e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02830 K15042 - gmx:100789135 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g02830 5 54036381 54040709 Accr5g02830 5 54036381 54040709 ECH