Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02824 ATGGGAAGCAAGAAGAAACACGATCTGGAGCTTGAGAAAGTTCGTTTAGTGAGCCTGGCTCTTGATTTCGGCTTCGATGAAGACTCCGCCAGAAAATGCTTGGATCGGCTTGTCGCCTTATACGGTGAGGATGGCCGGGATTTTATCACTGTGGAGCACTGCGGTGATGATTTTCTAGCAGCTTTAGCTGATTCAATGCAAGATACTGAGGAATGGGATGATTTACAGGCAATAGAATCAGAAGCTTGTGGAACTTTGACTAACCTACTTGATAAAAATGCTGTCGGGTGTAAGTATGAAGATAATGGCATTTTAGGAGGTTGCATTAATATTATCGAGGATTCTCCGGAACTTCAGAAAAACCAGAAAGTGGTGGAGTTGGTTTCAAGTGACGAGGATATGGACTTCAGTATTTCTAGGGAAAAATGTGCACCACCAGGGTCTTATTTGAAAGATAATATATTTGCACGCCAACAGTCTCCAATATCAGGGGACTGCAGAAGTAGCATCACTCAGGGATCGATTTCTTCAACTGCCAGCAAAATAAGGTGGTCAGAACCTAAGGATGAAAACCGTACTCTCACTTATGAAGAATTACAGGATCTGGATAACATTGAAATGGCAAATGTTGTTATATTTGGTAATAGGACATTTCGACCATTGCAGCATCAAGCTTGTAAAGTAGCTTTGGCAAAGCAAGATTGTTTTATTCTTATGCCAACGGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACTCTTCAATCAGGTGTTACAGTAGTTGTATCTCCTTTACTCTCACTCATTCAGGACCAGATAGTCACGTTGAACCTCAAGTTTGGAATACCAGCTACATTTTTGAATTCTCAGCAAACTACTTCACAAGCAGCAGCTGTCCTTCAAGAACTAAGAAAAGACAAACCATCATGCAAGCTCTTGTATGTGACGCCTGAGAGAATTGCTGGCAATCAATCATTTCTTGAGGTTCTAAAATGCTTGCACAACAAGGGACAGCTAGCAGGTTTCGTTGTTGATGAGGCGCACTGCGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGACTAGGATGCCTTAAGCTGAACTTTCCTGATGTGCCTGTCATGGCATTGACTGCCACTGCAACCCACTCTGTCCGCGAGGACATCTTAAGTGCTTTAAGAATCCCTCGTGCAATTGTCCTTGAGAGAAGCTTTGATAGGCCAAACTTGAAGTATGAAGTCATTGTTAAGACAAAAGAGCCGCTAAAGCAGCTTGGGAAGCTAGTAATGGACCGCTTCAAGAATCAATGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTTGAGGTCTCAAAATATTTGAACCAGAAATGTAACATTAAGACCGTGTATTACCATGCTGGCTTGGCTGCCCGCCAGAGAGTTGCTGTTCAAAAGAAATGGCACGACGGAGAGGTCCACATTGTTTGTGCAACTATTGCTTTTGGAATGGGGATAGACAAGCCTGATGTTCGCTTTGTCATCCACAATACGTTGTCTAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGATAATCTACCTTCAGTTTGCATTGCTCTCTACCAGAAGAAGGATTTTAGTAGAGTCGTATGCTTGATAAGAAATGGCCAAGGTTATAGAAGAGAGAGTCTTAAGTCGGCAATCGCTCAAGCCAAAAAGATGCAACAATATTGTGAACTAAAGGATGAATGCCGGAGGCAAGCTTTACTCAAACACTTTGGAGAATCTCTTGACAGAAAAACCTGCAAATACGGATCTAACCCCTGCGATAACTGCCTCGAGAATGGTATGTGA 1860 0.4263 MGSKKKHDLELEKVRLVSLALDFGFDEDSARKCLDRLVALYGEDGRDFITVEHCGDDFLAALADSMQDTEEWDDLQAIESEACGTLTNLLDKNAVGCKYEDNGILGGCINIIEDSPELQKNQKVVELVSSDEDMDFSISREKCAPPGSYLKDNIFARQQSPISGDCRSSITQGSISSTASKIRWSEPKDENRTLTYEELQDLDNIEMANVVIFGNRTFRPLQHQACKVALAKQDCFILMPTGGGKSLCYQLPATLQSGVTVVVSPLLSLIQDQIVTLNLKFGIPATFLNSQQTTSQAAAVLQELRKDKPSCKLLYVTPERIAGNQSFLEVLKCLHNKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGCLKLNFPDVPVMALTATATHSVREDILSALRIPRAIVLERSFDRPNLKYEVIVKTKEPLKQLGKLVMDRFKNQCGIVYCLSKSECVEVSKYLNQKCNIKTVYYHAGLAARQRVAVQKKWHDGEVHIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIALYQKKDFSRVVCLIRNGQGYRRESLKSAIAQAKKMQQYCELKDECRRQALLKHFGESLDRKTCKYGSNPCDNCLENGM 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02824 619 Pfam Helicase conserved C-terminal domain 431 533 IPR001650 -
Accr5g02824 619 CDD DEXHc_RecQ 212 409 - -
Accr5g02824 619 Gene3D - 177 409 IPR027417 -
Accr5g02824 619 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 226 402 IPR014001 -
Accr5g02824 619 NCBIfam RecQ family ATP-dependent DNA helicase 212 615 IPR004589 GO:0004386|GO:0006310
Accr5g02824 619 CDD SF2_C_RecQ 410 543 - -
Accr5g02824 619 FunFam ATP-dependent DNA helicase 410 617 - -
Accr5g02824 619 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 341 350 IPR002464 -
Accr5g02824 619 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 424 582 IPR001650 -
Accr5g02824 619 Pfam DEAD/DEAH box helicase 220 388 IPR011545 GO:0003676|GO:0005524
Accr5g02824 619 Gene3D - 410 618 IPR027417 -
Accr5g02824 619 PANTHER DNA HELICASE RECQ FAMILY MEMBER 198 615 - -
Accr5g02824 619 Pfam RecQ zinc-binding 546 615 IPR032284 -
Accr5g02824 619 SMART ultradead3 214 418 IPR014001 -
Accr5g02824 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 554 IPR027417 -
Accr5g02824 619 SMART helicmild6 452 534 IPR001650 -
Accr5g02824 619 FunFam ATP-dependent DNA helicase 199 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02824 Accr-Chr5 53996947 54002203 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02824 343 532 Eukaryotic Initiation Factors Gene Family AT5G11170 25.641 1.60e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g02824 5 53996947 54002203 Accr5g02824 5 53996947 54002203 ECH