Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02817 ATGGATCATAATTACAGGGCGAGTGCTCATGGCCTCCCGCTCCAGGCGCCGCGCACGGATGATTCCGGATCAGATCGCTTCTTCAAGACCCAGATCGCCAATCACCCTCTTTATCCCAACTTACTCTCCGCCTACTTAGCCTGCCAAAAGGTCGGAGCTGACCCTGAAAGAGCTTCCCTTCTTGAAGAAATAGGACACCAACGCCCCCTCCTCCATACTCCTCCACACATAGGTCAAGACCCTGAACTCGACAGCTTCATGGAATCTTTCTGTGGACTTCTCCATAGATACAAAGAGGAACTCTCTAGGCCCTTCCACCAAGCCTCCTTGTTTCTCTGCACTATGGAATCAAAACTCACCAATCTTTGCAGCGGAACATTCGCAATTTCCTCATCGGCTCCGCTTTCTGATGAGGCAAGTGGGAGTAAAGAGAAGGGACTAAGTTGTGGAGATGCAGAAGCAGGTGAAGGTGAAGGTGATGAATGTGAAGGGAGGCGTTTTGCAGGCGAGCAAGAGGTAAGAGAAATGCTGCTTCGCAAGTACAGTGGCTACCTTAGCAGCCTGAGGGAGGAGTTGTTGAAGAAGAAGAAAAAGAATAAGCTTCCAAAGGAAGCGAGGATGACTCTTCTTCAATGGTGGAACAGCTACTACAGATGGCCTTATCCTACGGAAGAGGAGAAATTGAAGCTATCAGAAATGACAGGACTGGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGAGGAAACGGCACTGGAAACCGTCCGAAGATATGCGTGTCTCCGTCATGGAAGGTGACAGTGGTGGCGGCGGCATAGGTTGA 825 0.4945 MDHNYRASAHGLPLQAPRTDDSGSDRFFKTQIANHPLYPNLLSAYLACQKVGADPERASLLEEIGHQRPLLHTPPHIGQDPELDSFMESFCGLLHRYKEELSRPFHQASLFLCTMESKLTNLCSGTFAISSSAPLSDEASGSKEKGLSCGDAEAGEGEGDECEGRRFAGEQEVREMLLRKYSGYLSSLREELLKKKKKNKLPKEARMTLLQWWNSYYRWPYPTEEEKLKLSEMTGLDQKQINNWFINQRKRHWKPSEDMRVSVMEGDSGGGGIG 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02817 274 SMART ELK_2 172 193 IPR005539 GO:0003677
Accr5g02817 274 Pfam Homeobox KN domain 212 251 IPR008422 GO:0003677|GO:0006355
Accr5g02817 274 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 31 260 - -
Accr5g02817 274 Pfam KNOX2 domain 76 123 IPR005541 GO:0003677|GO:0005634
Accr5g02817 274 Pfam ELK domain 174 193 IPR005539 GO:0003677
Accr5g02817 274 ProSiteProfiles 'Homeobox' domain profile. 192 255 IPR001356 GO:0003677
Accr5g02817 274 ProSiteProfiles ELK domain profile. 172 192 IPR005539 GO:0003677
Accr5g02817 274 Gene3D - 190 267 - -
Accr5g02817 274 SMART HOX_1 194 259 IPR001356 GO:0003677
Accr5g02817 274 ProSitePatterns 'Homeobox' domain signature. 230 253 IPR017970 GO:0000981|GO:0006355
Accr5g02817 274 SMART KNOX2_2 73 124 IPR005541 GO:0003677|GO:0005634
Accr5g02817 274 Pfam KNOX1 domain 29 67 IPR005540 GO:0003677|GO:0005634
Accr5g02817 274 MobiDBLite consensus disorder prediction 133 162 - -
Accr5g02817 274 MobiDBLite consensus disorder prediction 1 23 - -
Accr5g02817 274 SMART KNOX1_2 26 70 IPR005540 GO:0003677|GO:0005634
Accr5g02817 274 CDD homeodomain 214 256 IPR001356 GO:0003677
Accr5g02817 274 SUPERFAMILY Homeodomain-like 194 264 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02817 Accr-Chr5 53950867 53954793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02817 18 270 Homeobox Transcription Factor Family AT1G23380 49.035 3.74e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Accr5g02817 KNOX2 9.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02817 - - gmx:102660463 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g02817 5 53950867 53954793 Accr5g02817 5 53950867 53954793 ECH