Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02814 ATGGATTTCCAGGGCTTCTTAAATGACTTGCAAGATTGGGAACTTTCTCGTAAGGACAAAGCGCGAACAATGAAGTCACAGGCGCCGCAAAAGGAAAAATTGGGTGTGGAGAAAACATCAAGAGGAGAAACTTCATCGTTTGATTTTACAAAAAGTACTTCAGGACAATACGATTTATCAAGAAATAAAGATCCTTTTGGTAATGTCCATAGTGGTCTCACCACTGAAGATGTTCCCAATGCTGCTTCCGAAAAAGAACTGGGTAATGAATACTTCAAGCAGAAGAAATTTAAGGAAGCTATTGACTGCTATTCAAGAAGTATTGCCTTCTCACCGACAGCTGTGGCATATGCAAATAAAGCAATGGCCTTTATCAAACTCAGAAGATTTCAACAGGCTGAGGATGACTGTAAAGAGGCCTTAAATCTAGATGATCGTTACATAAAAGCATACTCACGCCGAGCAACGGCTAGAAAAGAACTTGGGAAACTTAAAGAAGCAATGGAGGATGCTGAATTTGCTCTGCTCTTGGAACCTGAAAATCAAGAAGTCAAGAAACAGTATGCTGATATCAAATCTTTGTATGAGAATGAAATTCTTCTGAAAGCATCTGGAGCTCTGAGAAGCTCTCTACAGGGAACTCAGAAGGTGGGAAAGTCAGAGGCAAATATTGATAGGGCAACCATCCATCCTCTTCCAAACACTACTGAAAAATCAAGGGCTGCTGACGTTCAAGATCACACAGAGAGACATAGCAGAATTAAAAAGCAAGAAATGAAGGCATCTGTTCAACATCTTGCTTCAAGGGTAGCTTCTCGAGTCATGGCTGAAGCTGCAAAAAATATAACACCGCCAAATTCAGCTTATCAGTTTGAGGTCTCATGGAGAGGGTTTTCAGGTGATCCTGCCCTGCAGACTCGTCTTTTAAAGGCCATATCTCCTCAGGATTTGCCAAAGATATTCAAAAATGCCTTATCTTCTGCCCTACTAATGGACATCATTAAGTGTGTGGCATCCTTTTTCACTGAAGACACAGCTCTGGCTGTCAGGTACTTGGAGCACTTGACCAAGGTTTCAAGATTTGAGATGCTCATTTTGTGTCTTACATCAACAGATAAGCATGATCTGCGCAAGATCTGGGAGGAAGTTTTCTGCAGCGAGGCAACTCCAATGGAGTATGCAGAGATTCTTGACAACCTCCGATCCAAATACTGCGTTGAAGATTGA 1227 0.4165 MDFQGFLNDLQDWELSRKDKARTMKSQAPQKEKLGVEKTSRGETSSFDFTKSTSGQYDLSRNKDPFGNVHSGLTTEDVPNAASEKELGNEYFKQKKFKEAIDCYSRSIAFSPTAVAYANKAMAFIKLRRFQQAEDDCKEALNLDDRYIKAYSRRATARKELGKLKEAMEDAEFALLLEPENQEVKKQYADIKSLYENEILLKASGALRSSLQGTQKVGKSEANIDRATIHPLPNTTEKSRAADVQDHTERHSRIKKQEMKASVQHLASRVASRVMAEAAKNITPPNSAYQFEVSWRGFSGDPALQTRLLKAISPQDLPKIFKNALSSALLMDIIKCVASFFTEDTALAVRYLEHLTKVSRFEMLILCLTSTDKHDLRKIWEEVFCSEATPMEYAEILDNLRSKYCVED 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02814 408 Pfam Tetratricopeptide repeat 85 113 IPR001440 GO:0005515
Accr5g02814 408 SUPERFAMILY TPR-like 76 193 IPR011990 GO:0005515
Accr5g02814 408 ProSiteProfiles TPR repeat profile. 81 114 IPR019734 GO:0005515
Accr5g02814 408 MobiDBLite consensus disorder prediction 40 75 - -
Accr5g02814 408 MobiDBLite consensus disorder prediction 18 39 - -
Accr5g02814 408 MobiDBLite consensus disorder prediction 18 75 - -
Accr5g02814 408 Pfam Tetratricopeptide repeat 116 144 IPR019734 GO:0005515
Accr5g02814 408 SMART tpr_5 81 114 IPR019734 GO:0005515
Accr5g02814 408 SMART tpr_5 148 181 IPR019734 GO:0005515
Accr5g02814 408 SMART tpr_5 115 147 IPR019734 GO:0005515
Accr5g02814 408 Coils Coil 154 174 - -
Accr5g02814 408 Pfam Potential Monad-binding region of RPAP3 284 373 IPR025986 -
Accr5g02814 408 Gene3D Tetratricopeptide repeat domain 71 179 IPR011990 GO:0005515
Accr5g02814 408 ProSiteProfiles TPR repeat profile. 148 181 IPR019734 GO:0005515
Accr5g02814 408 PANTHER OS05G0129900 PROTEIN 1 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02814 Accr-Chr5 53931624 53935931 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02814 85 151 U-box Gene Family AT3G07370 39.706 1.55e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02814 K23002 - gmx:100784528 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g02814 5 53931624 53935931 Accr5g02814 5 53931624 53935931 ECH