Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02780 ATGCAAGGACAATCCAGCAGAGCGAAACGGAGCCCGACTTGCAAGAGTTTGCCATCTCACACTCACAGTGCCAAGATTCGAGACAAAGATGTAGGAAATGTCACCGGCATCCAGATGAGAAAGTTCGGGGATTTAGACTCTGGATTGAATGATATTCCGATGTCAGTACCAACCGGTGAAGTTGATTTGAGCCCAGATGAAGGCACGACTTCTTGGTTGAATTATACCCTAGATGACTTCTTTCACCATGACTATAATTCTGAGTTTTTTCATGAACCGATTGGGGACACTGTAAATGAGACCCCTCCCTCGGTTAATCATTATCTAAGGGATAAAAAAACTAACTGTAATCGGGAATTTAGGGACTGTCATAATAATCCTTGTAGTGCCACCCAGCATTCACATTCCAGGGAAATCACCGAGATTCCATCTATCTCTGGTGGTTTCTCTGGCTTAAAGATGCATAAGAATGACCCGATAACACCTAGTACTAGTTCCACTTCCACCATAATCAACTTCCCCCACTTTGCAAGACCTGCTTCTAGCGTGAACGCCAATCTTCAGAGCATGAGTAGGATGTCTGGTTTATCTTTAGCAAGATCAGAAAGCATGTTACATATGAATAAAGGTGCTGCCACAACTAGCGGCAATCCTCCTGAATCAGCCTTTATTATTCCCAAGAGTGAACATCCAGGGGAGTCAAATATGCACTGCCAACAGGCGTTGGGTTCCTTCAAGTATGATTTGGAAACGTTGGAATTGAAATCTCTGGAACAGAAAGGCGTCACTTCTGAACAGTTAAATCATACCCGCAAAGAAGATACCTTTAAGGATGATCAGACTTCTGATCAAGTTCTTGCTGAGAGTGGCACTAAAGGACATACAACTCATGAAAAAAGCATAGAGCAGGCAGTTGCCTCTTCCTCTGTTTGCTCTGGCAATGGCGCGGAGATGTTTTCAACCAACTCAAATCAAAATTTGAAGCAAAGTCGAGACACCGAGGGATCTGAGGGTCACAGTGAAGATGTTGAGGAAGAATCAGCCTTTGCCAGAAAGGCAGGTCCTGCACGTGGAGGTACAGGTTCCAACAGAAGCCGTGCAGCTGAAGTGCATAATCTATTTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAAATGCGTGCTTTGCAAGAGCTCATACCCAATTGCAACAAGGTGGACAAAGCTTCAATGCTGGATGAAGCAATTGAGTATCTGAAGACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAACTGGTTTATACGTACCTCCAATGATGTTACCCCATGGAATGCAGCACATGCATTCACATATGTCTCCATTTCCACCTATGGGTGGTTGCATGCCATTGGGATTAGGAATGGGATATGCTATGAGGATGGCTAATATGAGTAGTGGGTGTTCTAGATTTCCAATGATTCAGGTGCCCCAAATGCAAGGAACTCACATTTCGGTTCCCTCTATGTTTGGGGCCACTGCTTTGCATGGGATGGAAAGATCAAATCCTCAGATGTTTGGGTTATGTGGTCAGGGATTTCATTTGTCAGGGGCGCCTCTCATGAACCCATCAACTTTGGGACTAAATGGCAGTAGGACCGCTGGAATAACAAACGACATGGACTCTGCTTCAGCCTCTGGCTTGAAGGGTCCTATACAGGGCACAGGCGGCAGTAACCCAACAAGGGATATTTCTACCCAGTGTGAAGCACCAAATGTTGGATTAGATGAATAA 1755 0.4479 MQGQSSRAKRSPTCKSLPSHTHSAKIRDKDVGNVTGIQMRKFGDLDSGLNDIPMSVPTGEVDLSPDEGTTSWLNYTLDDFFHHDYNSEFFHEPIGDTVNETPPSVNHYLRDKKTNCNREFRDCHNNPCSATQHSHSREITEIPSISGGFSGLKMHKNDPITPSTSSTSTIINFPHFARPASSVNANLQSMSRMSGLSLARSESMLHMNKGAATTSGNPPESAFIIPKSEHPGESNMHCQQALGSFKYDLETLELKSLEQKGVTSEQLNHTRKEDTFKDDQTSDQVLAESGTKGHTTHEKSIEQAVASSSVCSGNGAEMFSTNSNQNLKQSRDTEGSEGHSEDVEEESAFARKAGPARGGTGSNRSRAAEVHNLFERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGTGLYVPPMMLPHGMQHMHSHMSPFPPMGGCMPLGLGMGYAMRMANMSSGCSRFPMIQVPQMQGTHISVPSMFGATALHGMERSNPQMFGLCGQGFHLSGAPLMNPSTLGLNGSRTAGITNDMDSASASGLKGPIQGTGGSNPTRDISTQCEAPNVGLDE 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02780 584 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 363 426 IPR036638 GO:0046983
Accr5g02780 584 MobiDBLite consensus disorder prediction 260 366 - -
Accr5g02780 584 MobiDBLite consensus disorder prediction 1 20 - -
Accr5g02780 584 CDD bHLH_AtPIF_like 366 428 IPR047265 -
Accr5g02780 584 SMART finulus 372 421 IPR011598 GO:0046983
Accr5g02780 584 MobiDBLite consensus disorder prediction 544 575 - -
Accr5g02780 584 MobiDBLite consensus disorder prediction 1 32 - -
Accr5g02780 584 MobiDBLite consensus disorder prediction 332 351 - -
Accr5g02780 584 MobiDBLite consensus disorder prediction 265 281 - -
Accr5g02780 584 Gene3D - 362 424 IPR036638 GO:0046983
Accr5g02780 584 MobiDBLite consensus disorder prediction 300 331 - -
Accr5g02780 584 FunFam Basic helix-loop-helix transcription factor 361 424 - -
Accr5g02780 584 MobiDBLite consensus disorder prediction 209 236 - -
Accr5g02780 584 Pfam Helix-loop-helix DNA-binding domain 370 416 IPR011598 GO:0046983
Accr5g02780 584 PANTHER TRANSCRIPTION FACTOR PIF3 1 550 IPR044273 GO:0003700|GO:0006355
Accr5g02780 584 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 366 415 IPR011598 GO:0046983
Accr5g02780 584 MobiDBLite consensus disorder prediction 544 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02780 Accr-Chr5 53665203 53667962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02780 27 565 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 34.783 3.06e-57 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr5g02780 HLH 8.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02780 K12126 - gmx:100794974 585.489