Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02779 ATGCAAGGACAATCCAGCAGAGCGAAACGGAGCCCGACTTGCAAGAGTTTGCCATCTCACACTCACAGTGCCAAGATTCGAGACAAAGATGTAGGAAATGTCACCGGCATCCAGATGAGAAAGTTCGGGGATTTAGACTCTGGATTGAATGATATTCCGATGTCAGTACCAACCGGTGAAGTTGATTTGAGCCCAGATGAAGGCACGACTTCTTGGTTGAATTATACCCTAGATGACTTCTTTCACCATGACTATAATTCTGAGTTTTTTCATGAACCGATTGGGGACACTGTAAATGAGACCCCTCCCTCGGTTAATCATTATCTAAGGGATAAAAAAACTAACTGTAATCGGGAATTTAGGGACTGTCATAATAATCCTTGTAGTGCCACCCAGCATTCACATTCCAGGGAAATCACCGAGATTCCATCTATCTCTGGTGGTTTCTCTGGCTTAAAGATGCATAAGAATGACCCGATAACACCTAGTACTAGTTCCACTTCCACCATAATCAACTTCCCCCACTTTGCAAGACCTGCTTCTAGCGTGAACGCCAATCTTCAGAGCATGAGTAGGATGTCTGGTTTATCTTTAGCAAGATCAGAAAGCATGTTACATATGAATAAAGGTGCTGCCACAACTAGCGGCAATCCTCCTGAATCAGCCTTTATTATTCCCAAGAGTGAACATCCAGGGGAGTCAAATATGCACTGCCAACAGGCGTTGGGTTCCTTCAAGTATGATTTGGAAACGTTGGAATTGAAATCTCTGGAACAGAAAGGCGTCACTTCTGAACAGTTAAATCATACCCGCAAAGAAGATACCTTTAAGGATGATCAGACTTCTGATCAAGTTCTTGCTGAGAGTGGCACTAAAGGACATACAACTCATGAAAAAAGCATAGAGCAGGCAGTTGCCTCTTCCTCTGTTTGCTCTGGCAATGGCGCGGAGATGTTTTCAACCAACTCAAATCAAAATTTGAAGCAAAGTCGAGACACCGAGGGATCTGAGGGTCACAGTGAAGATGTTGAGGAAGAATCAGCCTTTGCCAGAAAGGCAGGTCCTGCACGTGGAGGTACAGGTTCCAACAGAAGCCGTGCAGCTGAAGTGCATAATCTATTTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAAATGCGTGCTTTGCAAGAGCTCATACCCAATTGCAACAAGGTGGACAAAGCTTCAATGCTGGATGAAGCAATTGAGTATCTGAAGACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAACTGGTTTATACGTACCTCCAATGATGTTACCCCATGGAATGCAGCACATGCATTCACATATGTCTCCATTTCCACCTATGGGTGGTTGCATGCCATTGGGATTAGGAATGGGATATGCTATGAGGATGGCTAATATGAGTAGTGGGTGTTCTAGATTTCCAATGATTCAGGTGCCCCAAATGCAAGGAACTCACATTTCGGTTCCCTCTATGTTTGGGGCCACTGCTTTGCATGGGATGGAAAGATCAAATCCTCAGATGTTTGGGTTATGTGGTCAGGGATTTCATTTGTCAGGGGCGCCTCTCATGAACCCATCAACTTTGGGACTAAATGGCAGTAGGACCGCTGGAATAACAAACGACATGGACTCTGCTTCAGCCTCTGGCTTGAAGGGTCCTATACAGGGCACAGGCGGCAGTAACCCAACAAGGGATATTTCTACCCAGGTCATGAACGATGCTCGGCATTGA 1746 0.4507 MQGQSSRAKRSPTCKSLPSHTHSAKIRDKDVGNVTGIQMRKFGDLDSGLNDIPMSVPTGEVDLSPDEGTTSWLNYTLDDFFHHDYNSEFFHEPIGDTVNETPPSVNHYLRDKKTNCNREFRDCHNNPCSATQHSHSREITEIPSISGGFSGLKMHKNDPITPSTSSTSTIINFPHFARPASSVNANLQSMSRMSGLSLARSESMLHMNKGAATTSGNPPESAFIIPKSEHPGESNMHCQQALGSFKYDLETLELKSLEQKGVTSEQLNHTRKEDTFKDDQTSDQVLAESGTKGHTTHEKSIEQAVASSSVCSGNGAEMFSTNSNQNLKQSRDTEGSEGHSEDVEEESAFARKAGPARGGTGSNRSRAAEVHNLFERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGTGLYVPPMMLPHGMQHMHSHMSPFPPMGGCMPLGLGMGYAMRMANMSSGCSRFPMIQVPQMQGTHISVPSMFGATALHGMERSNPQMFGLCGQGFHLSGAPLMNPSTLGLNGSRTAGITNDMDSASASGLKGPIQGTGGSNPTRDISTQVMNDARH 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02779 581 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 363 426 IPR036638 GO:0046983
Accr5g02779 581 PANTHER TRANSCRIPTION FACTOR PIF3 1 550 IPR044273 GO:0003700|GO:0006355
Accr5g02779 581 MobiDBLite consensus disorder prediction 1 20 - -
Accr5g02779 581 MobiDBLite consensus disorder prediction 260 366 - -
Accr5g02779 581 CDD bHLH_AtPIF_like 366 428 IPR047265 -
Accr5g02779 581 SMART finulus 372 421 IPR011598 GO:0046983
Accr5g02779 581 MobiDBLite consensus disorder prediction 1 32 - -
Accr5g02779 581 MobiDBLite consensus disorder prediction 265 281 - -
Accr5g02779 581 MobiDBLite consensus disorder prediction 332 351 - -
Accr5g02779 581 MobiDBLite consensus disorder prediction 300 331 - -
Accr5g02779 581 Pfam Helix-loop-helix DNA-binding domain 370 416 IPR011598 GO:0046983
Accr5g02779 581 Gene3D - 362 424 IPR036638 GO:0046983
Accr5g02779 581 FunFam Basic helix-loop-helix transcription factor 361 424 - -
Accr5g02779 581 MobiDBLite consensus disorder prediction 544 581 - -
Accr5g02779 581 MobiDBLite consensus disorder prediction 209 236 - -
Accr5g02779 581 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 366 415 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02779 Accr-Chr5 53664953 53667962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02779 27 565 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 34.783 4.63e-57 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr5g02779 HLH 8.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02779 K12126 - gmx:100794974 574.318