Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02778 ATGGGAAGGCACTCATGCTGCTACAAGCAAAAGCTGAGAAAAGGCCTCTGGTCACCAGAGGAAGACGAGAAGCTTCTCGATTACATCACCAAGCATGGCCATGGATGTTGGAGCTCTGTCCCCAAACTAGCTGGCTTGCAGAGATGTGGGAAGAGCTGCAGATTAAGGTGGATAAATTATCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCCCAACAGGAAGAAAATTTGATTATTGAGCTCCATGCAGCACTAGGAAACAGGTGGTCTCAAATTGCAGCCCAGTTGCCGGGAAGAACCGACAATGAGATAAAGAACCTATGGAATTCCTGCCTGAAAAAGAAGCTCAGGCAAAGAGGCATTGACCCAAACACTCACAAGCCTCTCTCTGAGGTTGAGAACAACAAGGATAAGCCTTCCTCCGCCGACAGAACCAATCAGGAAACCTCAGTATTCAATGAACACCACTCTTTGGCTCACGAGTCAACAAAACCAAGACCTGCACAACTACACCCTCCTCTTCAAGTTTCATCACCCTCCAACTTCAGCAGTAGCAATAATAATTGCCATGATCTGTTTCTGGATAGGTGTTCTTCTGATGTTGGAGGCTATTTCTCTTTCCAAACCTTCAACAACTATGCAACAAATCCTGACACCAGTTCTTCTCTTTGCTTCATTCCTAGCTCTACCACTTCCTCTCAGGTTATGTCAGACCTTAACTCAGCTGTGACTCCCACTTTGCTCCATTCAATTTTGCCTACAAATGCAAATCCCACTCTTAACCTCCAATCTGATAACAATATCTCTGCCCATATTCATGGTGTTCAGGCATGGGAAGCCACTGCCTTTAATAACAATGGAGGCAAAAACAGTGGGGGCAATGGTGATATGCCATTACAAAAGTACAGCAATAACTTCATAGAGAACAACACTTTAACGTGGGAAAAGGATTCCCATGTTAACGTGGTACCCTTACAAGCAGAACAAGAAGACATAAAATGGTCTGAGTATCTTAATACCCCATTTTTTCTGGGCAACCAAATCTCATCTCAATCTTTCTACAGTGAGGTTAAACCAGAAATGGGGTTCATGACAGATGAGGCGACTACTAGTTGGCACCATAGTAGTCAGCAGCAACATCCACAAGTTTTCCAAGCTTCAGATATATATAGCAAGGATATGCAGAGATTTTCAGTGGCTTTTGGACAAACGCTTTAG 1218 0.4401 MGRHSCCYKQKLRKGLWSPEEDEKLLDYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAALGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENNKDKPSSADRTNQETSVFNEHHSLAHESTKPRPAQLHPPLQVSSPSNFSSSNNNCHDLFLDRCSSDVGGYFSFQTFNNYATNPDTSSSLCFIPSSTTSSQVMSDLNSAVTPTLLHSILPTNANPTLNLQSDNNISAHIHGVQAWEATAFNNNGGKNSGGNGDMPLQKYSNNFIENNTLTWEKDSHVNVVPLQAEQEDIKWSEYLNTPFFLGNQISSQSFYSEVKPEMGFMTDEATTSWHHSSQQQHPQVFQASDIYSKDMQRFSVAFGQTL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02778 405 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Accr5g02778 405 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Accr5g02778 405 SMART sant 66 114 IPR001005 -
Accr5g02778 405 SMART sant 13 63 IPR001005 -
Accr5g02778 405 MobiDBLite consensus disorder prediction 119 143 - -
Accr5g02778 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Accr5g02778 405 PANTHER MYB DOMAIN PROTEIN 55 1 287 - -
Accr5g02778 405 FunFam Myb transcription factor 11 67 - -
Accr5g02778 405 CDD SANT 17 61 IPR001005 -
Accr5g02778 405 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Accr5g02778 405 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Accr5g02778 405 Gene3D - 11 67 - -
Accr5g02778 405 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Accr5g02778 405 CDD SANT 69 109 IPR001005 -
Accr5g02778 405 MobiDBLite consensus disorder prediction 119 182 - -
Accr5g02778 405 Gene3D - 68 147 - -
Accr5g02778 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Accr5g02778 405 FunFam MYB transcription factor 68 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02778 Accr-Chr5 53656785 53658203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02778 1 405 MYB Transcription Factor Family AT1G09540 48.585 5.47e-112 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr5g02778 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02778 K09422 - qsa:O6P43_010970 454.907