Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02753 ATGGCAGAGAAGCCGACTGAGTCCATCCGCCCAGGAATCACAGCCTCCCATCTTGCTTCCACGTTCGGCAATGATTTTAACGAGCTGGTTTGGCAAAATGGCCAAATTCTGGTGCAAGGAGGGTCATCGAGTAGAACAATGAAGAGGCCTTCTTGCTTTGGTTACGAAGCTTACCACGAAGATCACTACATCGCAAAACGGGCAAGGTTAAACACCTTACACTTGCTTTTGGACCCTTCCCATCAAAATCCCCGACAAACGAACGACCTATGTTCCTATCCGTTTGATTTTAGTAATAAGCATGGGGATGAATTTTCCAATTTGAGAGCAGAAAGAGAATCTGATTCCAAGCCCACTGGGGGAAGTTCTCAGTTATGCTCATCAACTTCTTTACAGACCCATAAGCATGGCTTGGGATCTGATGAAAGGGTTGAAAAGATTAATTTCTCCAACTTCTTGAAACCTGCATTGCTTTTCAAATCTACTTATCAGGGAAACAGTGCAAGTCGGCACCCAAACAGATTGGAGGAGATCAAAGCAACTGATGGTGGTAGCAGTAAAGCTCTTGATCATTCTGTCGTGATTGACTCGGCTAAGGGATCACGTGGTCTCAAGTACGGAGTTCATCCTGGCCAAACAGCTTTTACTTCCAATAAAGCAAACTCAACAACACCCTTTGATGGAAAAAAGGATCAGGATACACTGCTCCCCGATGAACAATCCGAAGCTGTTGGATGCGATAGGGCCCTCAGGAATCAGGGATCACATGGTCAATATCATCATCAAACACACAGTAGAAAAGGAAAAACAACTGTTGAGTTTTCTCGTGCATCCTTGATGGCATCTTCTTCTTTGTGCTCGCTTGGAGCCTCCAATGACCCTAGTCTCCCAAGTAGGAAACACGAGGACACCGACGACTCAACCTATGTAAGTGATAATGATGAAGAAACAGAAGATACGACGCCAAAGGAAACGCCGGCTCAAGATGGTTCAAGAGGCAAGAGAATCAGGAACACGCGGACGTATAATTTGTCGGAGAGGAAACGACGAGATAAGATCAACAAGAAGATGCGCGCATTAAAACAGCTAATACCTAATTGCAATGAGGTGGACAAGGCTTCAATGCTGGACGATGCCATCGATTATCTGAAGACCCTCAAGCTTCAGTTGCAGGTATTATCAATGGGAAGTTGCGTTTGGATGCCTCCAATGATGTCGATGTTAGGCATAGGCATCCCTAGCAGCCTACCTCATCATCAGTTTCTTCCACAAATGATTCCAGCAGGTTTCCCCAATCCCGTCCTTCCCAATACTCAATTCCCAATAATGTCCCAACAATCACCTTTCGTTTCCATGCCTCCCAAGCCTATCCAACCCTTTCTTTCTTCCCACCTCTCCACTTTTGATCATCACGACTCTGATCTTAACGCGCAGCTTGTTTCTGCAGCTATGCCAAAAGTTACTCAGGGATCAAAGTGA 1479 0.455 MAEKPTESIRPGITASHLASTFGNDFNELVWQNGQILVQGGSSSRTMKRPSCFGYEAYHEDHYIAKRARLNTLHLLLDPSHQNPRQTNDLCSYPFDFSNKHGDEFSNLRAERESDSKPTGGSSQLCSSTSLQTHKHGLGSDERVEKINFSNFLKPALLFKSTYQGNSASRHPNRLEEIKATDGGSSKALDHSVVIDSAKGSRGLKYGVHPGQTAFTSNKANSTTPFDGKKDQDTLLPDEQSEAVGCDRALRNQGSHGQYHHQTHSRKGKTTVEFSRASLMASSSLCSLGASNDPSLPSRKHEDTDDSTYVSDNDEETEDTTPKETPAQDGSRGKRIRNTRTYNLSERKRRDKINKKMRALKQLIPNCNEVDKASMLDDAIDYLKTLKLQLQVLSMGSCVWMPPMMSMLGIGIPSSLPHHQFLPQMIPAGFPNPVLPNTQFPIMSQQSPFVSMPPKPIQPFLSSHLSTFDHHDSDLNAQLVSAAMPKVTQGSK 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02753 492 Pfam Helix-loop-helix DNA-binding domain 342 386 IPR011598 GO:0046983
Accr5g02753 492 MobiDBLite consensus disorder prediction 117 135 - -
Accr5g02753 492 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 386 IPR011598 GO:0046983
Accr5g02753 492 MobiDBLite consensus disorder prediction 211 229 - -
Accr5g02753 492 CDD bHLH_AtPIF_like 337 397 IPR047265 -
Accr5g02753 492 PANTHER TRANSCRIPTION FACTOR PIF3 7 478 IPR044273 GO:0003700|GO:0006355
Accr5g02753 492 SMART finulus 343 392 IPR011598 GO:0046983
Accr5g02753 492 MobiDBLite consensus disorder prediction 320 343 - -
Accr5g02753 492 MobiDBLite consensus disorder prediction 286 343 - -
Accr5g02753 492 MobiDBLite consensus disorder prediction 108 139 - -
Accr5g02753 492 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 338 399 IPR036638 GO:0046983
Accr5g02753 492 Gene3D - 333 394 IPR036638 GO:0046983
Accr5g02753 492 MobiDBLite consensus disorder prediction 209 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02753 Accr-Chr5 53454062 53456481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02753 147 411 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 34.432 9.52e-31 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr5g02753 HLH 1.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02753 K12126 - pcin:129304463 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g02753 5 53454062 53456481 Accr5g02753 5 53454062 53456481 ECH