Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g02752 ATGGGCAAAACCTCTAGTTCCTCGTCGTCGTCGTTTAGCAGTAACAGCAACGGCCACGCCGCTTTCTCAACCGCATCTTCTCTCGAACACCATCCCACAGATCTTAGGCTGGGACTCAGTATTTCACCCACCCCAAATCTTCACTCTTGTATTTCAAGGGGGGAGCCTTCAGATAAGAGGACGCTGGGAAGCAGGGGTTCACATGAAGCTGAAGTAAATGGCCGCAGCCTCTTTGTAAAGGTGTACATGGAAGGGATTCCCATAGGCAGAAAACTGGATTTATTAGCTCTAGATGGCTACCACGATTTAATAAAGACGCTCGAGCACATGTTTGACACTACCATTACCTTGGGCTCTGAGATGGAGGAAATACTTCATCAACCAGAGAGATGGCATGTGCTGACGTATGAAGATGAGGAAGGGGACTTGATCATGGTTGGAGATATCCCTTGGGAGATGTTCTTATCCACTGTCAGGAGATTGAGGATCACCAGGATAGACGCAATCGGGTGTTAG 516 0.4826 MGKTSSSSSSSFSSNSNGHAAFSTASSLEHHPTDLRLGLSISPTPNLHSCISRGEPSDKRTLGSRGSHEAEVNGRSLFVKVYMEGIPIGRKLDLLALDGYHDLIKTLEHMFDTTITLGSEMEEILHQPERWHVLTYEDEEGDLIMVGDIPWEMFLSTVRRLRITRIDAIGC 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g02752 171 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 165 IPR003311 GO:0005634|GO:0006355
Accr5g02752 171 MobiDBLite consensus disorder prediction 47 68 - -
Accr5g02752 171 Gene3D - 70 170 - -
Accr5g02752 171 SUPERFAMILY CAD & PB1 domains 67 164 - -
Accr5g02752 171 ProSiteProfiles PB1 domain profile. 76 168 IPR000270 GO:0005515
Accr5g02752 171 Pfam AUX/IAA family 71 165 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g02752 Accr-Chr5 53439168 53439982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g02752 65 163 B3 DNA Binding Superfamily AT1G59750 37.374 2.06e-15 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Accr5g02752 AUX_IAA 3.8e-30 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g02752 K14484 - gmx:100783140 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g03353 2 69175549 69176356 Accr5g02752 5 53439168 53439982 CCT
Accr5g02752 5 53439168 53439982 Accr5g02752 5 53439168 53439982 ECH